Detailed information NTG0528032

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BAJP3144_RS08925
• Genome accession: NZ_CP082283
• Coordinates: 1837005..1838141 (-)
• Length: 378 a.a.
• NCBI ID: WP_316249986.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP3144
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1832005..1843141

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAJP3144_RS08900 (BAJP3144_08900)	-	1833035..1833727 (-)	693	WP_065180794.1	YiiX/YebB-like N1pC/P60 family cysteine hydrolase	-
BAJP3144_RS08905 (BAJP3144_08905)	yunB	1834233..1835006 (+)	774	WP_222893519.1	sporulation protein YunB	-
BAJP3144_RS08910 (BAJP3144_08910)	-	1835225..1835557 (+)	333	WP_222893520.1	YolD-like family protein	-
BAJP3144_RS08915 (BAJP3144_08915)	-	1835550..1836800 (+)	1251	WP_222893521.1	UV damage repair protein UvrX	-
BAJP3144_RS08920 (BAJP3144_08920)	-	1836833..1837015 (-)	183	WP_021493634.1	hypothetical protein	-
BAJP3144_RS08925 (BAJP3144_08925)	rapF	1837005..1838141 (-)	1137	WP_316249986.1	Rap family tetratricopeptide repeat protein	Regulator
BAJP3144_RS08930 (BAJP3144_08930)	-	1838283..1838588 (-)	306	WP_222893522.1	hypothetical protein	-
BAJP3144_RS08935 (BAJP3144_08935)	-	1838926..1839177 (-)	252	WP_222893523.1	phage holin	-
BAJP3144_RS08940 (BAJP3144_08940)	-	1839198..1839590 (-)	393	WP_014417852.1	hypothetical protein	-
BAJP3144_RS08945 (BAJP3144_08945)	-	1839705..1840751 (-)	1047	WP_222893524.1	N-acetylmuramoyl-L-alanine amidase family protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 44556.31 Da
• Isoelectric Point: 4.9690

>NTDB_id=528032 BAJP3144_RS08925 WP_316249986.1 1837005..1838141(-) (rapF) [Bacillus amyloliquefaciens strain JP3144]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKDEIEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKVS
DLLEKIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKLAVVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGNMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNMVEGKQVCEQGLMLSKELNDEVLGKMFDFLMGLFVGNAKDRLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI

Nucleotide

• Length: 1137 bp

>NTDB_id=528032 BAJP3144_RS08925 WP_316249986.1 1837005..1838141(-) (rapF) [Bacillus amyloliquefaciens strain JP3144]
TTGGAGCAATTGATCTCTTCTTCAAAAGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGATTGTTCAGTGTTGC
AGATGCAGAAATTCTAAAGGATGAAATTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGATTTATTGTTGTACTATT
CGCTCATGTGTTTTAGGCATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGTCCAAAAGTTTCA
GACTTATTAGAAAAGATCGAAAGTAAACAAAGTGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAATACGAATATCTTAAGGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGTTAGCCGTTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTATAAGGTAGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAC
CATATTGTTCAAGCAATAGAAACCTACAAAGCGCACGAAACTTACTCAATAAGAGTAATTCAATGTTCATTTGTCATTGG
CCTGAACTATTTAGACATGGAGTATCCAGAAAAAGCAATACCACATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCACGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGAAATATGGAGAAAGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTACTAGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTGTTCAACATGGTTGAGGGAAAACAGGTTTGTGAACAAGGTCTCATGCTATCAAAGG
AATTGAACGATGAAGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGGGAATGCCAAAGACCGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACCGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (188-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	45.932	100	0.463
rapC	Bacillus subtilis subsp. subtilis str. 168	46.032	100	0.46