Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   I6J13_RS00010 Genome accession   NZ_CP068213
Coordinates   1034..1744 (-) Length   236 a.a.
NCBI ID   WP_115342909.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 334..882 1034..1744 flank 152


Gene organization within MGE regions


Location: 334..1744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS00010 (I6J13_00010) treR 1034..1744 (-) 711 WP_115342909.1 trehalose operon repressor Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27597.67 Da        Isoelectric Point: 9.2438

>NTDB_id=528013 I6J13_RS00010 WP_115342909.1 1034..1744(-) (treR) [Streptococcus constellatus strain FDAARGOS_1156]
MKKYEQIFKLIEQDILNEKYQVNDYLPSEHELVQTYKVSRDTIRKSLDLLQKAGLIQKLKGQGSKVTKQEQIDFPVSNLT
SYQELVQQHGINSKTNVIQLEKITVDKKLSNLTGFPEYRLVWRIVRQRVVDDVVSVLDIDYLDKSLVPSMTREIAEQSIY
AYLEGKLGLHIAYAQKEITIDPATNRDKILMDIENDQHVVSVKSKVYLTDGQQFQFTDSRHKLEKFRFIDFAKRQK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=528013 I6J13_RS00010 WP_115342909.1 1034..1744(-) (treR) [Streptococcus constellatus strain FDAARGOS_1156]
ATGAAGAAATATGAACAAATTTTTAAACTCATAGAACAAGATATTCTAAATGAAAAATATCAAGTTAATGATTATCTCCC
TAGCGAGCATGAACTCGTCCAAACCTACAAAGTCAGCCGTGATACCATTCGCAAGTCACTTGATTTACTTCAAAAAGCTG
GTCTTATCCAAAAACTGAAAGGGCAGGGCTCTAAAGTTACTAAACAAGAACAGATTGACTTTCCTGTCTCCAATCTGACT
AGTTACCAAGAACTCGTGCAACAGCATGGGATAAATTCTAAAACAAATGTCATTCAGTTAGAAAAAATCACGGTTGATAA
AAAGTTATCCAATCTCACAGGCTTTCCTGAATATCGTCTGGTATGGCGAATTGTCCGCCAGAGAGTTGTAGATGACGTCG
TTTCCGTCTTAGATATTGATTACCTTGATAAGAGCCTTGTCCCTTCCATGACTCGAGAAATAGCAGAACAATCGATTTAT
GCTTATCTAGAAGGAAAACTAGGGCTGCACATTGCTTATGCCCAAAAAGAAATCACAATTGATCCAGCTACAAACCGCGA
TAAAATTTTGATGGACATTGAAAATGATCAACATGTCGTTTCTGTTAAGTCCAAAGTCTATCTTACAGATGGACAGCAAT
TTCAATTCACAGATAGTCGCCATAAACTGGAAAAATTCCGTTTTATTGACTTTGCTAAGCGACAAAAATGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.831

100

0.648