Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   BAJP3144_RS06900 Genome accession   NZ_CP082283
Coordinates   1334491..1336587 (-) Length   698 a.a.
NCBI ID   WP_191389692.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329491..1341587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS06875 (BAJP3144_06875) - 1330080..1330340 (+) 261 WP_003154690.1 aspartyl-phosphate phosphatase Spo0E family protein -
  BAJP3144_RS06880 (BAJP3144_06880) - 1330551..1332068 (-) 1518 WP_029974827.1 ATP-binding protein -
  BAJP3144_RS06885 (BAJP3144_06885) - 1332267..1332713 (+) 447 WP_003154686.1 MarR family winged helix-turn-helix transcriptional regulator -
  BAJP3144_RS06890 (BAJP3144_06890) motB 1332749..1333534 (-) 786 WP_017417652.1 flagellar motor protein MotB -
  BAJP3144_RS06895 (BAJP3144_06895) motA 1333506..1334321 (-) 816 WP_007408461.1 flagellar motor stator protein MotA -
  BAJP3144_RS06900 (BAJP3144_06900) clpE 1334491..1336587 (-) 2097 WP_191389692.1 ATP-dependent protease ATP-binding subunit ClpE Regulator
  BAJP3144_RS06905 (BAJP3144_06905) - 1336988..1338025 (+) 1038 WP_017417655.1 membrane protein -
  BAJP3144_RS06910 (BAJP3144_06910) - 1338123..1339244 (+) 1122 WP_191389694.1 hypothetical protein -
  BAJP3144_RS06915 (BAJP3144_06915) queC 1339494..1340153 (+) 660 WP_022553432.1 7-cyano-7-deazaguanine synthase QueC -
  BAJP3144_RS06920 (BAJP3144_06920) queD 1340214..1340594 (+) 381 WP_228842255.1 6-carboxytetrahydropterin synthase QueD -
  BAJP3144_RS06925 (BAJP3144_06925) queE 1340587..1341318 (+) 732 WP_003154676.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 77750.73 Da        Isoelectric Point: 5.2952

>NTDB_id=528010 BAJP3144_RS06900 WP_191389692.1 1334491..1336587(-) (clpE) [Bacillus amyloliquefaciens strain JP3144]
MRCQHCQKNEATIRLNMQVNSIQKQFVLCETCYTELTRKPSMSMGPQSFGFPFEQGFAPNQNKQQSGPEKGLLDELAQNV
TNGAKAGLIDPVIGRDNEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVAN
TGIRGQFEERMKQLMNELKERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAALE
RRFQPVMVHEPTIEQAISILEGIKDKYEKYHGVTFSNEAINACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLELDTVNE
EDAAERLKAIDAEKTKALHEENYELAAKLRDEEAALEKQLAHETPASSPEIGAEHIQAIVEQKTGIPVGKLQADEQVKMK
ELEEHLHQRVIGQEKAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDSIIRLDMSEYMEK
HAVSKIIGSPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVLIMTSNA
GTGEKQVKVGFQSEESVLEEQTLIDSLSAFFKPEFLNRFDSIIEFQSLKKEHLVKIVSLLLTELEDTLKERGISLSVTDD
AKEKIAEIGYHPAFGARPLRRTIQELIEDEMTDLLLDDNEIKAFHVVMEEDGIKVRAQ

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=528010 BAJP3144_RS06900 WP_191389692.1 1334491..1336587(-) (clpE) [Bacillus amyloliquefaciens strain JP3144]
ATGCGTTGTCAACATTGTCAGAAAAACGAGGCGACGATTCGCCTGAACATGCAAGTCAATTCCATTCAAAAACAATTCGT
TTTATGTGAAACATGTTATACAGAATTAACCCGAAAACCGTCTATGAGCATGGGGCCGCAATCATTCGGATTCCCGTTTG
AGCAAGGTTTCGCTCCCAATCAAAATAAACAGCAGTCCGGCCCTGAAAAAGGCCTGCTCGACGAGCTCGCTCAAAACGTC
ACAAACGGCGCAAAAGCAGGTCTGATTGACCCTGTGATCGGCCGCGATAATGAAGTGGCGCGCGTAATTGAAATTTTGAA
CCGCCGGAATAAAAACAATCCGGTGCTGATCGGTGAACCGGGCGTCGGTAAAACGGCTATTGCAGAAGGCCTCGCGCTTA
AAATCGCTGAAGGCGATGTGCCGAACAAATTGAAAAACAAAGAGCTTTACCTGCTTGACGTCGCTTCTCTCGTCGCCAAT
ACAGGGATCAGAGGCCAGTTTGAAGAAAGAATGAAACAATTAATGAACGAATTAAAAGAACGGAAAAACGTCATCTTGTT
CATTGATGAGATTCACCTTCTCGTAGGCGCCGGCTCTGCCGAGGGATCAATGGATGCCGGGAACATCCTGAAACCGGCGC
TTGCCAGAGGCGAGCTGCAGGTCATCGGGGCGACAACGCTGAAAGAGTACCGCCAGATTGAAAAAGATGCGGCGCTTGAA
AGACGCTTCCAGCCTGTCATGGTTCACGAGCCTACAATAGAACAAGCCATCAGCATTCTGGAAGGCATTAAAGATAAATA
CGAGAAATACCACGGCGTCACATTCAGCAATGAAGCGATAAACGCCTGTGTTACGCTTTCATCCCGTTACATTCAGGACC
GCCACCTGCCGGATAAAGCGATCGACTTATTAGATGAAGCCGGCTCTAAGGCGAACCTGGAGCTTGATACCGTAAATGAA
GAAGATGCGGCTGAGAGACTCAAAGCAATTGACGCGGAGAAAACAAAAGCGCTTCATGAAGAAAATTATGAGCTTGCCGC
GAAACTGCGTGATGAAGAAGCGGCTTTGGAAAAGCAGCTGGCGCATGAAACACCGGCCTCTTCACCTGAAATCGGTGCGG
AGCATATTCAAGCCATCGTTGAACAGAAAACAGGCATTCCGGTCGGAAAACTCCAGGCTGATGAACAAGTCAAAATGAAG
GAACTTGAAGAGCATCTTCATCAGCGTGTCATCGGTCAGGAAAAAGCCGTGAAAAAAGTGGCGAAAGCGGTCAGACGAAG
CCGCGCCGGCTTAAAATCCAAAAACAGACCTGTCGGCTCCTTCCTCTTTGTCGGACCGACCGGAGTCGGAAAAACCGAGT
TATCAAAGACACTCGCAGATGAACTGTTCGGTACAAAAGATTCCATTATCCGTCTCGATATGAGTGAATACATGGAAAAA
CACGCCGTATCAAAAATCATCGGTTCACCGCCGGGATATGTCGGACACGATGAAGCCGGTCAATTAACGGAAAAAGTGCG
CCGCAATCCGTACAGCATCGTGCTGCTCGATGAGATTGAAAAAGCCCACCCTGATGTCCAGCATATGTTTCTGCAGATTA
TGGAGGACGGCCGTCTGACAGACAGCCAGGGCAGAACGGTCAGCTTCAAAGATACCGTTTTGATTATGACAAGCAACGCT
GGAACCGGCGAAAAACAGGTGAAAGTCGGATTCCAATCTGAAGAGAGCGTCCTGGAAGAACAAACGCTGATTGATTCACT
GAGCGCGTTCTTCAAACCGGAGTTTTTAAACCGGTTTGACAGCATTATTGAATTCCAATCCCTGAAAAAAGAACATCTCG
TGAAAATCGTCAGCCTGCTTCTCACAGAGCTTGAAGACACATTAAAAGAGCGCGGCATCAGCCTGAGCGTCACCGATGAT
GCGAAAGAAAAAATCGCTGAAATCGGCTACCACCCCGCTTTCGGAGCACGCCCGCTCAGAAGAACCATCCAAGAATTGAT
CGAGGACGAAATGACAGATCTCTTATTGGATGACAACGAAATAAAAGCCTTCCATGTCGTAATGGAAGAGGACGGCATCA
AAGTCCGGGCACAATAA

Domains

Predicted by InterProScan.

AAA lid domain (AAA_lid_9)

(252-351)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(608-679)

AAA domain (Cdc48 subfamily) (AAA_2)

(436-602)

ATPase family associated with various cellular activities (AAA) (AAA)

(115-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

56.871

100

0.599
  clpC Lactococcus lactis subsp. cremoris KW2

56.812

100

0.597
  clpE Streptococcus pneumoniae Rx1

56.131

100

0.59
  clpE Streptococcus pneumoniae R6

56.131

100

0.59
  clpE Streptococcus pneumoniae D39

56.131

100

0.59
  clpE Streptococcus pneumoniae TIGR4

56.131

100

0.59
  clpC Bacillus subtilis subsp. subtilis str. 168

54.389

91.404

0.497
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.311

91.261

0.423
  clpC Streptococcus thermophilus LMD-9

44.154

93.123

0.411
  clpC Streptococcus pneumoniae Rx1

45.88

88.682

0.407
  clpC Streptococcus pneumoniae D39

45.88

88.682

0.407
  clpC Streptococcus pneumoniae TIGR4

45.88

88.682

0.407
  clpC Streptococcus thermophilus LMG 18311

43.538

93.123

0.405
  clpC Streptococcus mutans UA159

44.3

87.966

0.39