Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I48_RS25300 Genome accession   NZ_CP068211
Coordinates   5410321..5411685 (-) Length   454 a.a.
NCBI ID   WP_026384454.1    Uniprot ID   A0A0M9J6I0
Organism   Achromobacter xylosoxidans strain FDAARGOS_1091     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5405321..5416685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I48_RS25275 (I6I48_25270) - 5405779..5406780 (+) 1002 WP_054482149.1 tripartite tricarboxylate transporter substrate binding protein -
  I6I48_RS25280 (I6I48_25275) - 5406854..5407825 (+) 972 WP_054482150.1 tripartite tricarboxylate transporter substrate binding protein -
  I6I48_RS25285 (I6I48_25280) - 5407936..5408892 (+) 957 WP_024069544.1 2-hydroxyacid dehydrogenase -
  I6I48_RS25290 (I6I48_25285) - 5409095..5409334 (-) 240 WP_006384018.1 hypothetical protein -
  I6I48_RS25295 (I6I48_25290) - 5409535..5410308 (-) 774 WP_054482151.1 sulfite exporter TauE/SafE family protein -
  I6I48_RS25300 (I6I48_25295) radA 5410321..5411685 (-) 1365 WP_026384454.1 DNA repair protein RadA Machinery gene
  I6I48_RS25305 (I6I48_25300) - 5412117..5412761 (+) 645 WP_020928470.1 hypothetical protein -
  I6I48_RS25310 (I6I48_25305) hpaR 5412875..5413321 (+) 447 WP_054482152.1 homoprotocatechuate degradation operon regulator HpaR -
  I6I48_RS25315 (I6I48_25310) hpaD 5413323..5414174 (-) 852 WP_006384289.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  I6I48_RS25320 (I6I48_25315) hpaE 5414214..5415680 (-) 1467 WP_054482153.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48221.27 Da        Isoelectric Point: 6.9553

>NTDB_id=528010 I6I48_RS25300 WP_026384454.1 5410321..5411685(-) (radA) [Achromobacter xylosoxidans strain FDAARGOS_1091]
MAKTRTVYVCAECGGTTPKWQGKCPHCNAWNTLEETVESSAPAAAASHRYAPLASSSPVRSLSEIEARETPRTPTGLEEF
DRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSESTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLEAIQA
AVSEQKPSVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFE
GDTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAP
NPRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDRPLPRGLIAFGEVGLAG
EIRPAPRGQERLREAAKLGFSIALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=528010 I6I48_RS25300 WP_026384454.1 5410321..5411685(-) (radA) [Achromobacter xylosoxidans strain FDAARGOS_1091]
ATGGCCAAGACCCGAACCGTATACGTGTGCGCCGAATGCGGCGGCACCACCCCGAAATGGCAAGGCAAGTGTCCGCACTG
CAATGCCTGGAACACCCTGGAAGAAACCGTCGAATCGTCCGCGCCCGCGGCGGCCGCCTCGCACCGCTACGCGCCGCTGG
CCTCCAGCAGCCCCGTGCGCAGCCTGTCCGAGATCGAGGCGCGCGAAACCCCGCGTACCCCCACCGGGCTGGAGGAATTC
GACCGCGTGCTGGGCGGCGGCCTGGTGGCCGGCGCCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCCT
GCTGCTGCAGGCGCTGGCGTCGCTCTCGGAAAGCACCAACGTGCTTTATGTCACGGGCGAGGAATCGGCCGAGCAAGTGG
CGTTGCGCGCGCGCCGGCTGGGTTTGCAGACCGGCAACGTCAACCTGCTGGCGGAAATCCGCCTGGAGGCGATCCAGGCG
GCGGTGTCCGAGCAGAAGCCCAGCGTAGCCGTGATCGACTCGATCCAGACCCTCTACAGCGGCGAACTGACCGCCGCGCC
CGGCTCGGTGTCGCAGGTGCGCGAGTGCGCCGCGCAATTGACGCGCCTGGCCAAGCAGACCGGCATCGCCATCGTCATGA
TCGGCCACGTCACCAAGGACGGCGCGCTGGCCGGACCGCGCGTGCTCGAACACATCGTTGATACGGTGCTGTACTTCGAG
GGCGACACGCACTCGTCGTTCCGCCTGGTGCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGC
CATGACCGACCGCGGCCTGCGCGGCGTGGCCAACCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGCAGGTGGCCGGCT
CCTGCGTAATGGCCACGCAGGAGGGCACCCGTCCGCTGCTGGTCGAGATCCAGGCGCTGGTGGACAGTTCCCACGCGCCC
AATCCGCGCCGCCTGACGGTCGGCCTGGAGGGCAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGCCATGCCGGCGT
CTCGACCTTCGACCAGGACGTGTTCGTCAACGCCGTGGGCGGGGTGCGCATCACCGAGCCCGCGGCCGACCTGCCGGTGC
TGCTGGCCATCATGTCATCGCTGCGCGACCGGCCCCTGCCGCGCGGGCTGATCGCCTTCGGCGAAGTCGGCCTGGCGGGC
GAGATCCGGCCCGCGCCGCGCGGCCAGGAACGCCTGCGCGAAGCCGCCAAGCTGGGCTTCTCGATCGCGCTCATCCCCAA
GGCCAATGCGCCGCGCCAGCCCATCGAGGGGCTGGAGATCTGGGCGGTGGACCGGCTCGACGCCGCGCTCGACAAGCTGC
GCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M9J6I0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.096

100

0.513
  radA Streptococcus mitis NCTC 12261

46.476

100

0.465
  radA Streptococcus pneumoniae D39

48.712

94.053

0.458
  radA Streptococcus pneumoniae TIGR4

48.712

94.053

0.458
  radA Streptococcus mitis SK321

48.712

94.053

0.458
  radA Streptococcus pneumoniae R6

48.712

94.053

0.458
  radA Streptococcus pneumoniae Rx1

48.712

94.053

0.458