Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   BAJP3144_RS05750 Genome accession   NZ_CP082283
Coordinates   1134740..1135900 (+) Length   386 a.a.
NCBI ID   WP_100261695.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1129740..1140900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS05725 (BAJP3144_05725) - 1130485..1131672 (+) 1188 WP_160182560.1 putative glycoside hydrolase -
  BAJP3144_RS05730 (BAJP3144_05730) - 1131790..1132368 (+) 579 WP_007409110.1 GNAT family N-acetyltransferase -
  BAJP3144_RS05735 (BAJP3144_05735) spx 1132547..1132942 (+) 396 WP_003155034.1 transcriptional regulator Spx -
  BAJP3144_RS05740 (BAJP3144_05740) - 1133000..1133656 (-) 657 WP_014417421.1 TerC family protein -
  BAJP3144_RS05745 (BAJP3144_05745) mecA 1133932..1134588 (+) 657 WP_003155032.1 adaptor protein MecA Regulator
  BAJP3144_RS05750 (BAJP3144_05750) coiA 1134740..1135900 (+) 1161 WP_100261695.1 competence protein CoiA family protein Machinery gene
  BAJP3144_RS05755 (BAJP3144_05755) pepF 1136128..1137957 (+) 1830 WP_154817838.1 oligoendopeptidase F Regulator
  BAJP3144_RS05760 (BAJP3144_05760) - 1137995..1138162 (-) 168 WP_003155026.1 hypothetical protein -
  BAJP3144_RS05765 (BAJP3144_05765) spxH 1138449..1139351 (-) 903 WP_003155024.1 protease adaptor protein SpxH -
  BAJP3144_RS05770 (BAJP3144_05770) - 1139348..1139746 (-) 399 WP_003155023.1 thiol management oxidoreductase -
  BAJP3144_RS05775 (BAJP3144_05775) - 1139975..1140661 (-) 687 WP_022553553.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 386 a.a.        Molecular weight: 44446.24 Da        Isoelectric Point: 10.0426

>NTDB_id=528005 BAJP3144_RS05750 WP_100261695.1 1134740..1135900(+) (coiA) [Bacillus amyloliquefaciens strain JP3144]
MFSAVTADGRLIQLAGSYSKEKAAELRKKSWFCPVCKSELDIKLGREKLPHFAHKKSRLCPGESEPESEYHLEGKRQLFL
WLKTQGCSVSLEPYLTSAGQRPDLTAVSGEERLAFEFQCANLSADSLKSRTAGLKNAGYRPVWIIGAKRLKRMATQFFRL
SAFHWQFFEVHSFSSLLFYCPDARSFYRLHSITPFYTGYSYAGLTAIPLHKANLKDICHPEGRHSVRLPSWGRAVAGFRN
KSERFLSEDAGLIRRLFYERHQVAFPFLPSEVFIPVSAGFVFASPVFVWQGHLYLRIAELSKKGASIRLSGMVHDLRQKI
RRKEIRMRYGSQDSLIGMAVKQYADFLCLQDFLREIENEVYMPSSQWKRPQTAEELRRRDLLFFGE

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=528005 BAJP3144_RS05750 WP_100261695.1 1134740..1135900(+) (coiA) [Bacillus amyloliquefaciens strain JP3144]
ATGTTCAGTGCTGTGACTGCCGACGGACGGCTCATTCAGCTGGCCGGAAGCTATTCAAAGGAAAAAGCGGCGGAGCTGAG
AAAGAAAAGCTGGTTCTGCCCTGTTTGCAAAAGTGAGCTTGATATCAAACTGGGACGGGAGAAACTGCCGCACTTCGCTC
ATAAAAAAAGCAGGCTGTGTCCGGGGGAATCCGAACCCGAAAGCGAATACCATCTGGAAGGAAAAAGGCAGCTTTTTCTC
TGGCTAAAGACACAAGGGTGCAGTGTCAGCCTGGAACCGTATCTGACTTCCGCTGGACAGCGGCCTGACTTGACGGCAGT
AAGCGGAGAAGAGAGGCTGGCTTTTGAATTTCAATGTGCGAACCTTTCGGCGGACTCTTTAAAGAGCCGGACGGCAGGCC
TGAAAAATGCCGGTTACCGGCCGGTCTGGATCATCGGGGCAAAACGGTTAAAACGGATGGCCACGCAATTTTTCCGGCTT
TCTGCTTTTCACTGGCAGTTCTTTGAAGTCCATTCATTTTCCTCCTTACTGTTTTACTGCCCCGACGCCCGCTCCTTTTA
CAGGCTGCATTCCATCACTCCGTTTTACACCGGCTATTCTTATGCCGGCTTAACCGCAATCCCTCTTCACAAAGCAAACC
TGAAAGACATTTGTCATCCGGAAGGGCGGCACAGCGTCAGACTTCCCTCGTGGGGACGTGCCGTAGCCGGCTTCCGCAAC
AAAAGCGAGCGGTTTTTATCTGAAGATGCCGGTCTTATCCGGCGTCTTTTTTACGAAAGACATCAGGTTGCATTTCCATT
TCTCCCATCTGAAGTGTTTATTCCCGTTTCAGCGGGCTTTGTTTTTGCAAGTCCCGTTTTTGTGTGGCAGGGCCATTTAT
ACTTACGGATTGCGGAACTTTCTAAAAAAGGCGCGTCAATCCGATTATCCGGCATGGTTCATGATTTACGGCAAAAAATC
AGGCGTAAGGAGATCCGGATGAGGTATGGTTCACAAGATAGCCTTATCGGAATGGCGGTAAAACAATATGCTGATTTCTT
ATGCTTGCAGGATTTTTTAAGGGAAATTGAGAATGAAGTATATATGCCCTCATCTCAATGGAAGCGCCCTCAAACGGCAG
AAGAGCTGCGCCGGCGGGATCTGCTCTTTTTTGGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

45.479

97.409

0.443