Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6I48_RS04930 Genome accession   NZ_CP068211
Coordinates   1070110..1071555 (+) Length   481 a.a.
NCBI ID   WP_047992431.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain FDAARGOS_1091     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1065110..1076555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I48_RS04915 (I6I48_04915) leuA 1066192..1067901 (-) 1710 WP_054482354.1 2-isopropylmalate synthase -
  I6I48_RS04920 (I6I48_04920) - 1068292..1069269 (-) 978 WP_054482353.1 tripartite tricarboxylate transporter substrate binding protein -
  I6I48_RS04925 (I6I48_04925) - 1069461..1070111 (-) 651 WP_049052563.1 hypothetical protein -
  I6I48_RS04930 (I6I48_04930) rpoN/rpoN1 1070110..1071555 (+) 1446 WP_047992431.1 RNA polymerase factor sigma-54 Machinery gene
  I6I48_RS04935 (I6I48_04935) - 1071653..1071859 (+) 207 WP_054482352.1 hypothetical protein -
  I6I48_RS04940 (I6I48_04940) - 1071928..1072206 (+) 279 WP_026384933.1 type II toxin-antitoxin system RelE/ParE family toxin -
  I6I48_RS04945 (I6I48_04945) - 1072385..1072684 (+) 300 WP_006386990.1 bacterioferritin-associated ferredoxin -
  I6I48_RS04950 (I6I48_04950) - 1072654..1073574 (-) 921 WP_054482351.1 LysR substrate-binding domain-containing protein -
  I6I48_RS04955 (I6I48_04955) - 1073688..1074602 (+) 915 WP_054482350.1 DMT family transporter -
  I6I48_RS04960 (I6I48_04960) bfr 1075027..1075503 (+) 477 WP_006386993.1 bacterioferritin -
  I6I48_RS04965 (I6I48_04965) - 1075588..1076286 (-) 699 WP_026384932.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52525.90 Da        Isoelectric Point: 4.8651

>NTDB_id=527999 I6I48_RS04930 WP_047992431.1 1070110..1071555(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain FDAARGOS_1091]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLELEAEISQVLADNPLLERDDEPSSVETQAESERESSVQDDEP
APERDTPVEEMPGSGGVYPDDDSSLPEAARPDTLREHLLGQLVLTRAAPRDAALAALLIDELDENGYLGSPLEEILGWLP
AEMEPDLDELRAALSLLQSFDPAGIGARDMSECLLLQLRNPDTARLPEAADPKALACARLVCAQHLALLATGNHARLCAA
VGCDEATLRAAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQVTLNSAAVPRLQINGLYAQMLANQKESAHAGL
QSQLQQAKWMIRNVEQRFDTILRVAQAIVDRQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGAGVSTDGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMEKLADQGIVIARRTVAKYREALRIAPAALRKAQAAA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=527999 I6I48_RS04930 WP_047992431.1 1070110..1071555(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain FDAARGOS_1091]
ATGCAAAATATTGTACCTATGACCCGTCCTATTTTAGAACTGCGGCCCGGCCAGCATCTGACGCTGACCCCTCAATTGCA
GCAATCGATCCGGTTGCTGCAGCTGTCCACGCTCGAGCTCGAGGCGGAAATCTCGCAAGTGCTCGCCGACAATCCGTTGC
TGGAACGCGACGATGAGCCTTCCTCCGTCGAGACGCAGGCCGAATCCGAGCGCGAGTCGTCGGTGCAGGACGACGAACCC
GCGCCCGAGCGCGACACCCCGGTCGAGGAAATGCCGGGTTCGGGCGGGGTCTACCCCGATGATGATTCCAGCCTGCCCGA
GGCCGCCCGGCCCGATACCCTGCGCGAGCACCTGCTCGGGCAACTGGTGCTGACCCGCGCCGCGCCGCGCGACGCCGCGC
TGGCGGCGCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGGCTCGCCCCTGGAGGAAATCCTGGGCTGGCTGCCG
GCCGAGATGGAGCCGGACCTGGACGAGCTGCGCGCCGCGCTGTCGCTGCTGCAATCGTTCGACCCGGCCGGCATCGGCGC
GCGCGACATGTCCGAGTGCCTGCTGTTGCAATTGCGCAATCCCGACACGGCCCGGTTGCCCGAGGCCGCGGATCCCAAGG
CGCTGGCCTGCGCCCGCCTGGTCTGCGCCCAGCATCTGGCGCTGCTGGCCACCGGCAACCATGCCAGGCTGTGCGCCGCG
GTCGGTTGTGACGAGGCCACGCTGCGCGCGGCGCACGCCCTGATCCTGCGTCTGGAGCCCCGTCCGGGCCGCGCCTGGAC
GGTCCCGGCGGCCGATTACGCGGTGCCCGACGTCATCGTGCGCAAGACGCGCCGCGGCTGGCAGGTGACGCTCAACAGCG
CCGCCGTGCCGCGACTGCAGATCAATGGCCTGTACGCCCAAATGCTGGCCAACCAGAAGGAGTCGGCCCACGCCGGCTTG
CAGTCTCAGCTGCAACAGGCGAAATGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGAGTGGCCCAGGC
CATTGTCGACCGCCAGACCGCCTTCTTCAGCCAGGGGCCGGCGGCCATGCGCCCGCTCATCCTCAAGGACATTGCCGGCG
AGCTGGGCCTGCATGAGTCCACCATTTCACGCGCCACGACACAGAAGTACATGCTCACTCCCTTCGGTACGCTGGAGCTC
AAGCGCTTCTTCGGGGCGGGGGTGTCGACCGATGGCGGCGACGCCACATCCGCCACGGCGGTGCAGACCTTCATCCGCCA
GATGGTGGCCGAGGAGAACCGGGCCAAGCCGCTGTCCGACAGCCAGATCATGGAAAAACTGGCCGACCAGGGCATCGTCA
TCGCCCGCAGGACGGTCGCGAAATACCGCGAGGCACTGCGGATCGCGCCGGCCGCGCTGCGCAAGGCGCAGGCCGCGGCG
CGGTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.505

100

0.52