Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I6I48_RS00070 Genome accession   NZ_CP068211
Coordinates   16005..17051 (-) Length   348 a.a.
NCBI ID   WP_065423292.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain FDAARGOS_1091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 11005..22051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I48_RS00065 (I6I48_00065) - 14213..15871 (+) 1659 WP_054481811.1 CYTH and CHAD domain-containing protein -
  I6I48_RS00070 (I6I48_00070) pilA 16005..17051 (-) 1047 WP_065423292.1 signal recognition particle-docking protein FtsY Machinery gene
  I6I48_RS00075 (I6I48_00075) rsmD 17422..17988 (+) 567 WP_006385943.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I6I48_RS00080 (I6I48_00080) coaD 18047..18550 (+) 504 WP_006385942.1 pantetheine-phosphate adenylyltransferase -
  I6I48_RS00085 (I6I48_00085) - 18729..18980 (+) 252 WP_006385941.1 YfhL family 4Fe-4S dicluster ferredoxin -
  I6I48_RS00090 (I6I48_00090) - 18977..20197 (+) 1221 WP_049055629.1 benzoate/H(+) symporter BenE family transporter -
  I6I48_RS00095 (I6I48_00095) - 20262..20648 (-) 387 WP_054481810.1 MOSC N-terminal beta barrel domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 36219.76 Da        Isoelectric Point: 8.5379

>NTDB_id=527997 I6I48_RS00070 WP_065423292.1 16005..17051(-) (pilA) [Achromobacter xylosoxidans strain FDAARGOS_1091]
MPQQPVAPAPAVSQPAATPSAPVVAPAPAAIVPAPAAPEPEAAPKKASWLSRLKQGLSRTGQSIGGIFVGVKVDENLFEE
LESALIMADAGLEATEKLLTALRARVKKERIEDPAKVKAALRQLLADHLRPLERAFDLKRAQPLVVMIAGVNGAGKTTSI
GKLAHTFQRQGASVLLAAGDTFRAAAREQLIEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARGMGVVMVDTAGRLPTQL
HLMEELKKIRRVIGKADPAAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIP
VYWIGVGESLEDLQPFVADEFAGALLAD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=527997 I6I48_RS00070 WP_065423292.1 16005..17051(-) (pilA) [Achromobacter xylosoxidans strain FDAARGOS_1091]
GTGCCGCAGCAGCCAGTGGCTCCCGCGCCGGCGGTTTCGCAGCCCGCCGCAACGCCGTCGGCGCCGGTCGTCGCCCCGGC
TCCCGCCGCCATTGTGCCGGCCCCTGCCGCGCCCGAACCGGAAGCCGCGCCCAAGAAGGCGTCCTGGCTGTCGCGGCTCA
AGCAGGGCCTGTCGCGCACCGGCCAGAGCATTGGCGGCATCTTCGTCGGCGTCAAGGTCGACGAGAACCTGTTCGAGGAA
CTCGAATCGGCGCTCATTATGGCCGATGCCGGCCTGGAAGCCACCGAGAAGCTGCTGACCGCGCTGCGCGCGCGGGTCAA
GAAAGAACGCATCGAGGACCCGGCCAAGGTCAAGGCCGCGCTGCGCCAGCTGCTGGCCGACCACCTGCGTCCGCTGGAGC
GCGCCTTCGACCTGAAGCGCGCGCAGCCGCTGGTGGTGATGATCGCGGGCGTCAACGGCGCGGGCAAGACCACGTCGATC
GGCAAGCTGGCGCACACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCCGCCGCGCG
CGAGCAACTGATCGAATGGGGCAGCCGCAACAACGTCACCGTGATCTCGCAGGATGGCGGCGACCCGGCGGCGGTGGCGT
TCGACTCGGTCAACGCCGGCCGCGCGCGCGGCATGGGCGTGGTGATGGTGGACACGGCCGGCCGCCTGCCGACCCAGCTG
CACCTGATGGAAGAACTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGACCCGGCCGCGCCGCACGAGGTGCTGCTGGT
GGTGGACGGCAACACCGGCCAGAACGCGTTGGCGCAGATCCGCGCGTTCGACGCGGCCATCAACCTGACGGGCCTGGTCG
TGACCAAGCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCGGTGGCGGCGGGCAGCCAGGGCGTGCGGCCGATCCCG
GTGTACTGGATCGGCGTGGGCGAAAGCCTGGAAGACCTGCAGCCGTTCGTGGCCGACGAATTCGCCGGAGCCTTGCTGGC
CGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(62-123)

SRP54-type protein, GTPase domain (SRP54)

(144-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.846

100

0.543