Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BAJP3144_RS03935 Genome accession   NZ_CP082283
Coordinates   788802..789518 (+) Length   238 a.a.
NCBI ID   WP_128496508.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 783802..794518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS03905 (BAJP3144_03905) - 783982..784359 (+) 378 WP_014417184.1 DUF1992 domain-containing protein -
  BAJP3144_RS03910 (BAJP3144_03910) - 784369..784800 (-) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  BAJP3144_RS03915 (BAJP3144_03915) - 784816..785058 (-) 243 WP_003155595.1 spore germination protein -
  BAJP3144_RS03920 (BAJP3144_03920) - 785073..785333 (-) 261 WP_007408496.1 spore germination protein -
  BAJP3144_RS03925 (BAJP3144_03925) treP 785604..787019 (+) 1416 WP_014417186.1 PTS system trehalose-specific EIIBC component -
  BAJP3144_RS03930 (BAJP3144_03930) treC 787095..788780 (+) 1686 WP_222893493.1 alpha,alpha-phosphotrehalase -
  BAJP3144_RS03935 (BAJP3144_03935) treR 788802..789518 (+) 717 WP_128496508.1 trehalose operon repressor Regulator
  BAJP3144_RS03940 (BAJP3144_03940) - 789651..790316 (+) 666 WP_029974056.1 NAD(P)H-dependent oxidoreductase -
  BAJP3144_RS03945 (BAJP3144_03945) - 790352..791113 (-) 762 WP_094296478.1 YibE/F family protein -
  BAJP3144_RS03950 (BAJP3144_03950) - 791110..792249 (-) 1140 WP_163094376.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27408.40 Da        Isoelectric Point: 7.3803

>NTDB_id=527983 BAJP3144_RS03935 WP_128496508.1 788802..789518(+) (treR) [Bacillus amyloliquefaciens strain JP3144]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTAVHRLGLIPPPSEAAKELGAEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=527983 BAJP3144_RS03935 WP_128496508.1 788802..789518(+) (treR) [Bacillus amyloliquefaciens strain JP3144]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGATAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGGCGGTTCACCGTCTCGGGCTGATCCCGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTGCAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACACGTGCCTCTATTGACGAAGGCGATTTGCGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCTTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424