Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I6I49_RS09185 Genome accession   NZ_CP068206
Coordinates   1472422..1472745 (+) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain FDAARGOS_1092     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1470457..1471550 1472422..1472745 flank 872


Gene organization within MGE regions


Location: 1470457..1472745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I49_RS09170 (I6I49_09160) - 1470460..1471550 (+) 1091 WP_076612069.1 IS4-like element ISAba33 family transposase -
  I6I49_RS09175 (I6I49_09165) - 1471587..1471895 (+) 309 WP_148100826.1 transposase family protein -
  I6I49_RS09180 (I6I49_09170) - 1471920..1472270 (+) 351 Protein_1432 acyl-CoA thioesterase -
  I6I49_RS09185 (I6I49_09175) hns 1472422..1472745 (+) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=527978 I6I49_RS09185 WP_004692786.1 1472422..1472745(+) (hns) [Acinetobacter johnsonii strain FDAARGOS_1092]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=527978 I6I49_RS09185 WP_004692786.1 1472422..1472745(+) (hns) [Acinetobacter johnsonii strain FDAARGOS_1092]
ATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACTCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAACAAATTTTAG
AGTTTGGCGCGACCAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTGGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTCTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86