Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6I49_RS09025 Genome accession   NZ_CP068206
Coordinates   1439218..1440786 (-) Length   522 a.a.
NCBI ID   WP_201953271.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1092     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434218..1445786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I49_RS09000 (I6I49_08990) gpmI 1434239..1435786 (+) 1548 WP_201953265.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6I49_RS09005 (I6I49_08995) - 1435805..1436980 (+) 1176 WP_201953268.1 S41 family peptidase -
  I6I49_RS09010 (I6I49_09000) - 1436985..1438079 (-) 1095 Protein_1396 sigma-54 interaction domain-containing protein -
  I6I49_RS09015 (I6I49_09005) - 1438143..1438844 (+) 702 WP_005005861.1 IS1 family transposase -
  I6I49_RS09020 (I6I49_09010) - 1438873..1439202 (-) 330 Protein_1398 response regulator -
  I6I49_RS09025 (I6I49_09015) pilS 1439218..1440786 (-) 1569 WP_201953271.1 PAS domain-containing sensor histidine kinase Regulator
  I6I49_RS09030 (I6I49_09020) - 1440808..1441443 (-) 636 WP_004692836.1 response regulator -
  I6I49_RS09035 (I6I49_09025) - 1441659..1442714 (+) 1056 WP_201953274.1 serine hydrolase -
  I6I49_RS09040 (I6I49_09030) thrC 1442801..1443940 (-) 1140 WP_058868731.1 threonine synthase -
  I6I49_RS09045 (I6I49_09035) - 1444006..1445310 (-) 1305 WP_010325700.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59631.21 Da        Isoelectric Point: 6.7531

>NTDB_id=527976 I6I49_RS09025 WP_201953271.1 1439218..1440786(-) (pilS) [Acinetobacter johnsonii strain FDAARGOS_1092]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKHVRKRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFAACVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACALLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQVNDPEQALLHNMIAKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIIEDLPDVKDQ
IDYRISDPAQIQFDEQQLRQVLINLIRNAIRHNAAEADHIQIRVYSYKNLVHIEVRDFGDGVAKQDQTALFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=527976 I6I49_RS09025 WP_201953271.1 1439218..1440786(-) (pilS) [Acinetobacter johnsonii strain FDAARGOS_1092]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTCTAGGTGTTTGGTATGCGTCTTATCGACTGTTTATTGG
CTGTTGTTTGTTGTTGGTTTATCTACTGACCTATGAGCAGTTGTTTTCAAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCTTTTCAGCTATTGAGCCTCAAGCATGTGCGCAAGCGCATACCACTTCAGCTC
ACCTTGTTGTTTATTGTCGATGTCATTAGTCTCAGTTTACTCACTTTTGCCACCGATGGTCCGAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCGCTTGTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACCTTGATTGCTGTAA
TTACACTGGTTTATCAACACTTTATTGGAACGCTATTTTCAATTAGTTCATTGAATACCATTGGTAACAGCGCCGTACTT
GCCTTTTTGTTCTTTGTCGTTTATGGGTCTGGACAAATTGCAGTACGACGTTTTCAAGTCCTTGAAAATCTAAACTTCTA
TCAGTCCCAAGAACTGGATCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTTCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCCTGTGCATTATTGGGCATCTCCCCGATTTATGCCTATGACAAA
TATCCCTTATATAAGGCACAGCCTGATTTATTTGAACTACTCAAATTCGACCAACTGAAGAATGGGGAAAAATTCCAATT
TACATCGCAACTGAGTCGCTTTCAGATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAATCAGACACTGACCTTATTCG
TGCTGCAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGCATT
GCCCATGAAATTCGCAATCCATTGGCTGCCATCACCCAAGCCAATGAATTGATGCAGGTGAACGATCCTGAGCAAGCCCT
GTTACATAACATGATCGCCAAACAAGCCTCACGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACCTTGATTGATGTCGCCGCTTTTTTAGAACGTTTTATCATTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCCAGCTCAGATTCAGTTTGATGAACAACAACTGAGACAAGTGCTGATCAACCTGATTCG
AAACGCCATTCGGCATAATGCAGCTGAAGCCGATCACATTCAAATTCGTGTCTATAGCTATAAAAACCTCGTCCATATTG
AGGTCCGCGATTTTGGTGATGGGGTCGCCAAACAGGATCAAACCGCCCTGTTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.693

99.808

0.596