Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I6I50_RS07305 Genome accession   NZ_CP068195
Coordinates   1499593..1499916 (+) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1494593..1504916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS07280 (I6I50_07280) hemC 1495256..1496176 (+) 921 WP_062033245.1 hydroxymethylbilane synthase -
  I6I50_RS07285 (I6I50_07285) - 1496189..1496968 (+) 780 WP_159153595.1 uroporphyrinogen-III synthase -
  I6I50_RS07290 (I6I50_07290) - 1496965..1497807 (+) 843 WP_148826894.1 hypothetical protein -
  I6I50_RS07295 (I6I50_07295) - 1497812..1499005 (+) 1194 WP_201707070.1 heme biosynthesis protein HemY -
  I6I50_RS07300 (I6I50_07300) - 1499013..1499441 (+) 429 WP_159153593.1 thioesterase family protein -
  I6I50_RS07305 (I6I50_07305) hns 1499593..1499916 (+) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  I6I50_RS07310 (I6I50_07310) gspN 1500114..1500824 (+) 711 WP_171518793.1 type II secretion system protein N -
  I6I50_RS07315 (I6I50_07315) - 1500824..1501648 (+) 825 WP_201707071.1 type II secretion system protein N -
  I6I50_RS07320 (I6I50_07320) gspD 1501688..1504048 (+) 2361 WP_201707072.1 type II secretion system secretin GspD -
  I6I50_RS07325 (I6I50_07325) - 1504136..1504879 (+) 744 WP_184118830.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=527942 I6I50_RS07305 WP_004692786.1 1499593..1499916(+) (hns) [Acinetobacter johnsonii strain FDAARGOS_1093]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=527942 I6I50_RS07305 WP_004692786.1 1499593..1499916(+) (hns) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCCTATACCCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAACAAATTTTAG
AGTTTGGCGCGACTAAGCGTAAAAAAGGTACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTGGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTTTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86