Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   I6I50_RS03115 Genome accession   NZ_CP068195
Coordinates   627496..628353 (-) Length   285 a.a.
NCBI ID   WP_201707165.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 622496..633353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS03095 (I6I50_03095) miaB 623828..625285 (+) 1458 WP_010327568.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  I6I50_RS03100 (I6I50_03100) - 625324..626400 (+) 1077 WP_004977846.1 PhoH family protein -
  I6I50_RS03105 (I6I50_03105) ybeY 626458..626937 (+) 480 WP_114837372.1 rRNA maturation RNase YbeY -
  I6I50_RS03110 (I6I50_03110) - 627040..627450 (+) 411 WP_201706797.1 hypothetical protein -
  I6I50_RS03115 (I6I50_03115) tonB2 627496..628353 (-) 858 WP_201707165.1 energy transducer TonB Machinery gene
  I6I50_RS03120 (I6I50_03120) - 628615..629292 (+) 678 WP_201706798.1 hypothetical protein -
  I6I50_RS03125 (I6I50_03125) - 629448..630158 (+) 711 WP_078426185.1 DUF3108 domain-containing protein -
  I6I50_RS03130 (I6I50_03130) - 630249..630824 (+) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  I6I50_RS18930 - 631101..631595 (+) 495 WP_227556903.1 GAF domain-containing protein -
  I6I50_RS18935 - 631650..632153 (+) 504 WP_227556904.1 GGDEF domain-containing protein -
  I6I50_RS03140 (I6I50_03140) - 632366..632740 (+) 375 WP_201706799.1 hypothetical protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32597.16 Da        Isoelectric Point: 6.6632

>NTDB_id=527924 I6I50_RS03115 WP_201707165.1 627496..628353(-) (tonB2) [Acinetobacter johnsonii strain FDAARGOS_1093]
MPLAHDWWKDPIFTATVVLAVFLHLVVLTLQFAMPQENDAAVKEIAVTLRPSDKKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSIGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=527924 I6I50_RS03115 WP_201707165.1 627496..628353(-) (tonB2) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTCGTGCTGGCGGTGTTTTTGCATCTTGTAGT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCTGTCACTTTACGCCCTTCTGATA
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAAGGTTCAGGTACCTTTCGTGAGTCACATCGTATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTATAGGCGAACAGCAGCGTGAAACTTTAGAGCAGATCCAACAAAAACG
TGAACTGAATTTTGAAGAAAAACTGTTGATGACGACTTTAAGTTGGCAAAAACAAGCTGAGGATAATCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGTCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGTCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATATTTCGGCTGCCTATCTTGA
AAAGTTCCGTCAGAAAGTCGAGTTTTATGGCAACCGTTACTACCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGTATCCGCGCCATTCGCCTGATTGATAGTTCAGGCCATGAGATGCTC
GATGAGGCTGCAAAAGCCTCGGTACGTAAAGCTGCACCATTTGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGGACATGGCGTTTTGATCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.286

98.246

0.73