Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I6I51_RS13260 Genome accession   NZ_CP068187
Coordinates   2612539..2612862 (+) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2607539..2617862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS13235 (I6I51_13240) hemC 2608202..2609122 (+) 921 WP_201702243.1 hydroxymethylbilane synthase -
  I6I51_RS13240 (I6I51_13245) - 2609135..2609914 (+) 780 WP_201702245.1 uroporphyrinogen-III synthase -
  I6I51_RS13245 (I6I51_13250) - 2609911..2610753 (+) 843 WP_201702247.1 hypothetical protein -
  I6I51_RS13250 (I6I51_13255) - 2610758..2611951 (+) 1194 WP_201702249.1 heme biosynthesis protein HemY -
  I6I51_RS13255 (I6I51_13260) - 2611959..2612387 (+) 429 WP_125273404.1 thioesterase family protein -
  I6I51_RS13260 (I6I51_13265) hns 2612539..2612862 (+) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  I6I51_RS13265 (I6I51_13270) gspN 2613059..2613769 (+) 711 WP_201704310.1 type II secretion system protein N -
  I6I51_RS13270 (I6I51_13275) - 2613769..2614593 (+) 825 WP_125280606.1 type II secretion system protein N -
  I6I51_RS13275 (I6I51_13280) gspD 2614633..2616993 (+) 2361 WP_125280605.1 type II secretion system secretin GspD -
  I6I51_RS13280 (I6I51_13285) - 2617081..2617824 (+) 744 WP_125280604.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=527913 I6I51_RS13260 WP_004692786.1 2612539..2612862(+) (hns) [Acinetobacter johnsonii strain FDAARGOS_1094]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=527913 I6I51_RS13260 WP_004692786.1 2612539..2612862(+) (hns) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACTCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAACAAATTTTAG
AGTTTGGCGCGACCAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTAGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTCTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86