Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6I51_RS13115 Genome accession   NZ_CP068187
Coordinates   2581539..2583107 (-) Length   522 a.a.
NCBI ID   WP_201702219.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2576539..2588107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS13100 (I6I51_13105) gpmI 2577356..2578903 (+) 1548 WP_201702213.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6I51_RS13105 (I6I51_13110) - 2578922..2580097 (+) 1176 WP_201702215.1 S41 family peptidase -
  I6I51_RS13110 (I6I51_13115) pilR 2580102..2581466 (-) 1365 WP_407079296.1 sigma-54-dependent transcriptional regulator Regulator
  I6I51_RS13115 (I6I51_13120) pilS 2581539..2583107 (-) 1569 WP_201702219.1 PAS domain-containing sensor histidine kinase Regulator
  I6I51_RS13120 (I6I51_13125) - 2583129..2583764 (-) 636 WP_004692836.1 response regulator -
  I6I51_RS13125 (I6I51_13130) - 2583980..2585035 (+) 1056 WP_125273423.1 serine hydrolase -
  I6I51_RS13130 (I6I51_13135) thrC 2585123..2586262 (-) 1140 WP_125273422.1 threonine synthase -
  I6I51_RS13135 (I6I51_13140) - 2586328..2587632 (-) 1305 WP_010325700.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59581.06 Da        Isoelectric Point: 6.4939

>NTDB_id=527911 I6I51_RS13115 WP_201702219.1 2581539..2583107(-) (pilS) [Acinetobacter johnsonii strain FDAARGOS_1094]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKHVRKRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFASSVLVDKQKALIITLIAVITLVYQHFIGSLLAATSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACALLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQVNDPQQELLQNMITKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKNQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIQIRVYSYKNLVHIEVCDFGEGVATQDQTALFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=527911 I6I51_RS13115 WP_201702219.1 2581539..2583107(-) (pilS) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTCTAGGTGTTTGGTATGCATCTTATCGACTGTTTATTGG
CTGTTGTTTGTTGTTGGTTTATCTGCTGACTTACGAGCAGTTGTTTTCAAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGCATGTGCGCAAGCGCATACCACTTCAGCTC
ACCTTGCTGTTTATCGTCGATGTCATTAGCCTCAGTTTACTCACTTTCGCCACCGATGGTCCGAACTTACAGTTAAGTTT
ATTGTTTGTGATCACGATCTTTGCCTCTTCTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACCTTGATTGCTGTAA
TTACATTGGTTTATCAGCATTTTATTGGAAGCTTATTGGCTGCGACCTCGCTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTTTTTGTCGTTTATGGGTCTGGACAAATTGCAGTACGACGTTTTCAAGTCCTTGAAAATCTAAACTTCTA
TCAGTCCCAAGAACTGGATCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTTCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCCTGTGCATTATTGGGCATCTCCCCGATTTATGCCTATGACAAA
TATCCTTTATATAAGGCACAGCCTGATTTATTTGAACTCCTCAAATTCGACCAACTGAAAAATGGAGAAAAATTCCAATT
TACATCCCAGCTGAGTCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAATCAGACACTGACCTTATTCG
TGCTGCAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGCATT
GCACATGAAATTCGCAATCCACTGGCCGCCATCACGCAAGCCAATGAGTTGATGCAAGTCAATGATCCACAACAAGAGCT
GTTGCAGAACATGATTACCAAACAAGCCTCACGGATTGATAAAATTATTGGTGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACCTTGATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAAATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGACAAGTGCTGATCAACCTGATTCG
AAACGCCATTCGGCATAATGCAGCTGAAGCTGAGCACATTCAAATTCGTGTCTATAGCTACAAAAACCTCGTCCATATTG
AGGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAACCGCCCTGTTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.885

99.808

0.598