Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   I6I51_RS09035 Genome accession   NZ_CP068187
Coordinates   1729142..1729942 (-) Length   266 a.a.
NCBI ID   WP_183175136.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1724142..1734942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS09015 (I6I51_09020) - 1725210..1725908 (-) 699 WP_201701616.1 tetratricopeptide repeat protein -
  I6I51_RS09020 (I6I51_09025) hisS 1725936..1727231 (-) 1296 WP_201701617.1 histidine--tRNA ligase -
  I6I51_RS09025 (I6I51_09030) ispG 1727235..1728356 (-) 1122 WP_086210453.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  I6I51_RS09030 (I6I51_09035) - 1728375..1729151 (-) 777 WP_201701619.1 helix-turn-helix domain-containing protein -
  I6I51_RS09035 (I6I51_09040) pilF 1729142..1729942 (-) 801 WP_183175136.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  I6I51_RS09040 (I6I51_09045) rlmN 1729959..1731194 (-) 1236 WP_201701620.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  I6I51_RS09045 (I6I51_09050) ndk 1731317..1731748 (-) 432 WP_201701621.1 nucleoside-diphosphate kinase -
  I6I51_RS09050 (I6I51_09055) iscX 1731859..1732059 (-) 201 WP_004697668.1 Fe-S cluster assembly protein IscX -
  I6I51_RS09055 (I6I51_09060) - 1732150..1732701 (-) 552 WP_004697666.1 phosphatase PAP2 family protein -
  I6I51_RS09060 (I6I51_09065) - 1732894..1734174 (-) 1281 WP_201701622.1 glycosyltransferase family 1 protein -
  I6I51_RS09065 (I6I51_09070) - 1734315..1734731 (-) 417 WP_004983505.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30106.07 Da        Isoelectric Point: 9.1263

>NTDB_id=527892 I6I51_RS09035 WP_183175136.1 1729142..1729942(-) (pilF) [Acinetobacter johnsonii strain FDAARGOS_1094]
MKKPVSKLYLALTLGVSVWYLVGCQTVNTKGDPSKAVQVRTQLAAEYIKSNDYDAAKRTLDQALDIDSRDASANMMMGVL
LQREGSPQNVEKAERYFKHAITAEPKNAQARNNYGTYLYQIGRYNDAIDQLQVAGSTLGYDQRYRALENLGRAYLQVGRV
AEAEAAFKQALQVNSGAYLAMIEMAEISYLRQQNAEATQYYEQFVRAVGEKNLDARALWIGIRIARANHDTMGSQVLVNQ
LRALYPDSQEYKRYLQLQYTTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=527892 I6I51_RS09035 WP_183175136.1 1729142..1729942(-) (pilF) [Acinetobacter johnsonii strain FDAARGOS_1094]
TTGAAAAAACCCGTTTCTAAACTTTACCTTGCGCTGACACTGGGTGTGTCAGTGTGGTACTTGGTGGGTTGCCAAACCGT
GAATACGAAAGGTGATCCAAGTAAAGCAGTACAAGTTAGAACGCAGTTGGCGGCTGAATATATTAAGTCGAATGATTATG
ATGCTGCGAAACGTACATTGGATCAGGCATTAGACATCGACTCTCGTGATGCATCTGCAAATATGATGATGGGGGTGTTG
TTACAGCGTGAAGGCAGTCCACAAAATGTGGAAAAGGCAGAGCGTTATTTTAAGCATGCAATTACGGCTGAGCCAAAAAA
TGCACAGGCTCGTAACAACTACGGTACGTATTTATATCAAATTGGGCGTTATAATGACGCGATTGATCAACTTCAAGTTG
CAGGTTCAACTTTAGGGTATGATCAACGTTATCGAGCATTGGAGAATTTAGGTCGTGCGTATCTACAAGTAGGTCGAGTG
GCGGAAGCAGAAGCTGCTTTTAAACAAGCTCTACAGGTAAACTCAGGTGCCTATCTTGCCATGATCGAAATGGCGGAAAT
TTCATATTTACGTCAGCAAAATGCTGAAGCTACGCAATACTATGAACAGTTTGTGCGAGCGGTGGGCGAGAAAAACTTAG
ATGCGCGTGCGCTTTGGATTGGGATCCGAATTGCGCGAGCAAATCATGACACGATGGGTTCGCAAGTACTGGTCAACCAG
TTACGTGCATTGTATCCAGACAGTCAAGAATACAAACGTTATTTGCAATTACAGTACACTACTGAGGCCGTATGGAAGTA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_19)

(89-147)

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

68.657

100

0.692
  pilF Acinetobacter baylyi ADP1

64.662

100

0.647