Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   I6I53_RS16715 Genome accession   NZ_CP068176
Coordinates   2773484..2773837 (-) Length   117 a.a.
NCBI ID   WP_004997163.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2768484..2778837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS13685 (I6I53_13690) - 2768947..2770071 (-) 1125 WP_004997179.1 enoyl-CoA hydratase/isomerase family protein -
  I6I53_RS13690 (I6I53_13695) ung 2770068..2770781 (-) 714 WP_004997171.1 uracil-DNA glycosylase -
  I6I53_RS13695 (I6I53_13700) - 2770829..2771425 (-) 597 WP_004997169.1 6-carboxytetrahydropterin synthase -
  I6I53_RS13700 (I6I53_13705) gspK 2771587..2772552 (-) 966 WP_004997166.1 type II secretion system minor pseudopilin GspK -
  I6I53_RS13705 (I6I53_13710) - 2772558..2773391 (-) 834 WP_373866485.1 type II secretion system protein GspJ -
  I6I53_RS16715 xcpV 2773484..2773837 (-) 354 WP_004997163.1 type II secretion system protein GspI Machinery gene
  I6I53_RS13715 (I6I53_13720) - 2774094..2774657 (-) 564 WP_034697754.1 type II secretion system protein -
  I6I53_RS13720 (I6I53_13725) - 2774893..2775501 (-) 609 WP_004997159.1 TetR/AcrR family transcriptional regulator -
  I6I53_RS13725 (I6I53_13730) - 2775545..2776318 (-) 774 WP_004997157.1 TatD family hydrolase -
  I6I53_RS13730 (I6I53_13735) - 2776335..2776676 (-) 342 WP_004989449.1 PilZ domain-containing protein -
  I6I53_RS13735 (I6I53_13740) - 2776689..2777657 (-) 969 WP_004997153.1 DNA polymerase III, delta' subunit -
  I6I53_RS13740 (I6I53_13745) kdsB 2777672..2778433 (-) 762 WP_004989453.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 12986.79 Da        Isoelectric Point: 8.5184

>NTDB_id=527838 I6I53_RS16715 WP_004997163.1 2773484..2773837(-) (xcpV) [Acinetobacter ursingii strain FDAARGOS_1096]
MVALAIFAIAAVAVTKVGMQYTQSTANAILRTKAQFVAMNEAAQMEINKQWLTGTESKQITSQGETWQIDKRSESTISPN
VQRVEIQVSLFNTEQGKVESGITNVVFFNYPQQVKTQ

Nucleotide


Download         Length: 354 bp        

>NTDB_id=527838 I6I53_RS16715 WP_004997163.1 2773484..2773837(-) (xcpV) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGGTGGCTCTGGCTATTTTTGCAATTGCAGCCGTTGCTGTGACAAAAGTGGGTATGCAATACACTCAGTCCACTGCAAA
TGCCATTTTAAGAACCAAAGCCCAATTTGTTGCCATGAATGAGGCGGCTCAAATGGAAATTAATAAACAATGGTTGACTG
GAACTGAGTCTAAGCAAATCACGTCTCAGGGTGAAACATGGCAAATTGATAAACGTTCTGAATCTACGATCAGCCCTAAT
GTGCAGCGCGTTGAAATACAAGTCAGTTTATTTAATACTGAACAAGGTAAGGTCGAATCTGGCATTACCAATGTTGTGTT
TTTTAATTATCCTCAACAAGTAAAAACACAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

73.913

98.291

0.726