Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I6I53_RS06320 Genome accession   NZ_CP068176
Coordinates   1232019..1232345 (+) Length   108 a.a.
NCBI ID   WP_004995304.1    Uniprot ID   A0A3F3L3D3
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227019..1237345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS06295 (I6I53_06300) hemC 1227249..1228166 (+) 918 WP_004995319.1 hydroxymethylbilane synthase -
  I6I53_RS06300 (I6I53_06305) - 1228192..1228974 (+) 783 WP_004995318.1 uroporphyrinogen-III synthase -
  I6I53_RS06305 (I6I53_06310) - 1228971..1229807 (+) 837 WP_004995307.1 hypothetical protein -
  I6I53_RS06310 (I6I53_06315) - 1229817..1231004 (+) 1188 WP_004995306.1 hypothetical protein -
  I6I53_RS06315 (I6I53_06320) - 1231013..1231447 (+) 435 WP_004995305.1 thioesterase family protein -
  I6I53_RS06320 (I6I53_06325) hns 1232019..1232345 (+) 327 WP_004995304.1 H-NS family nucleoid-associated regulatory protein Regulator
  I6I53_RS06325 (I6I53_06330) gspN 1232510..1233253 (+) 744 WP_004995302.1 type II secretion system protein N -
  I6I53_RS06330 (I6I53_06335) - 1233253..1234086 (+) 834 WP_004995300.1 type II secretion system protein N -
  I6I53_RS06335 (I6I53_06340) gspD 1234129..1236402 (+) 2274 WP_004995297.1 type II secretion system secretin GspD -
  I6I53_RS06340 (I6I53_06345) - 1236472..1237125 (+) 654 WP_004995296.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12432.09 Da        Isoelectric Point: 4.8700

>NTDB_id=527824 I6I53_RS06320 WP_004995304.1 1232019..1232345(+) (hns) [Acinetobacter ursingii strain FDAARGOS_1096]
MKPDISELSVDELKRLQEEAEALIASKKDQAIEDAYNQILAVAEAVGFTVEELLEYGEQKRKKTTRKAVEPRYRNKNNPE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=527824 I6I53_RS06320 WP_004995304.1 1232019..1232345(+) (hns) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGAAACCAGATATTAGTGAACTTTCGGTTGATGAGTTAAAACGGTTGCAAGAAGAAGCTGAGGCATTAATTGCATCAAA
AAAAGATCAGGCAATTGAAGATGCTTATAATCAAATTTTAGCAGTTGCTGAGGCAGTGGGCTTTACGGTTGAAGAATTAC
TTGAGTATGGTGAGCAAAAGCGTAAAAAAACTACGCGTAAAGCCGTTGAGCCGCGCTACCGTAATAAAAATAATCCAGAA
GAAACTTGGACAGGTCGTGGTAAACAACCTCGCTGGCTTGTTGCTGAACTTGAAAAAGGTGCAAAACTTGAAGACTTCTT
GATCTAG

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3L3D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889