Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | I6I54_RS16340 | Genome accession | NZ_CP068174 |
| Coordinates | 4091118..4092485 (+) | Length | 455 a.a. |
| NCBI ID | WP_005677094.1 | Uniprot ID | - |
| Organism | Bacteroides caccae strain FDAARGOS_1097 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4065728..4114867 | 4091118..4092485 | within | 0 |
Gene organization within MGE regions
Location: 4065728..4114867
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I54_RS16250 (I6I54_16250) | - | 4066438..4067322 (-) | 885 | WP_005677119.1 | hypothetical protein | - |
| I6I54_RS16255 (I6I54_16255) | ccsA | 4067344..4069758 (-) | 2415 | WP_005677118.1 | cytochrome c biogenesis protein CcsA | - |
| I6I54_RS16260 (I6I54_16260) | - | 4069771..4073184 (-) | 3414 | WP_089421559.1 | SUMF1/EgtB/PvdO family nonheme iron enzyme | - |
| I6I54_RS16265 (I6I54_16265) | - | 4073181..4073750 (-) | 570 | Protein_3199 | hypothetical protein | - |
| I6I54_RS16270 (I6I54_16270) | - | 4073786..4074880 (-) | 1095 | WP_032855108.1 | endoribonuclease L-PSP | - |
| I6I54_RS16275 (I6I54_16275) | - | 4074892..4076649 (-) | 1758 | WP_005677112.1 | YncE family protein | - |
| I6I54_RS16280 (I6I54_16280) | - | 4076682..4077482 (-) | 801 | WP_005679844.1 | IclR family transcriptional regulator | - |
| I6I54_RS16285 (I6I54_16285) | - | 4077612..4078082 (-) | 471 | WP_005677110.1 | Lrp/AsnC family transcriptional regulator | - |
| I6I54_RS16290 (I6I54_16290) | - | 4078260..4079546 (+) | 1287 | WP_005677109.1 | O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein | - |
| I6I54_RS16295 (I6I54_16295) | - | 4079613..4079852 (+) | 240 | WP_005677108.1 | hypothetical protein | - |
| I6I54_RS16300 (I6I54_16300) | - | 4079955..4080866 (-) | 912 | WP_005677106.1 | mechanosensitive ion channel family protein | - |
| I6I54_RS16305 (I6I54_16305) | - | 4081091..4083343 (+) | 2253 | WP_005677104.1 | TonB-dependent receptor | - |
| I6I54_RS16310 (I6I54_16310) | pnuC | 4083359..4083964 (+) | 606 | WP_005677103.1 | nicotinamide riboside transporter PnuC | - |
| I6I54_RS16315 (I6I54_16315) | - | 4083961..4084587 (+) | 627 | WP_005677102.1 | thiamine diphosphokinase | - |
| I6I54_RS16320 (I6I54_16320) | thrC | 4084764..4086065 (-) | 1302 | WP_005677101.1 | threonine synthase | - |
| I6I54_RS16325 (I6I54_16325) | - | 4086079..4087287 (-) | 1209 | WP_005677100.1 | cofactor-independent phosphoglycerate mutase | - |
| I6I54_RS16330 (I6I54_16330) | thrA | 4087294..4089735 (-) | 2442 | WP_005677099.1 | bifunctional aspartate kinase/homoserine dehydrogenase I | - |
| I6I54_RS16335 (I6I54_16335) | - | 4090065..4090897 (+) | 833 | Protein_3213 | asparaginase domain-containing protein | - |
| I6I54_RS16340 (I6I54_16340) | radA | 4091118..4092485 (+) | 1368 | WP_005677094.1 | DNA repair protein RadA | Machinery gene |
| I6I54_RS16345 (I6I54_16345) | - | 4092543..4094204 (+) | 1662 | WP_005677092.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| I6I54_RS16350 (I6I54_16350) | - | 4094211..4094813 (+) | 603 | WP_005677091.1 | response regulator transcription factor | - |
| I6I54_RS16355 (I6I54_16355) | - | 4094833..4096167 (-) | 1335 | WP_005677090.1 | WD40-like domain containing protein | - |
| I6I54_RS16360 (I6I54_16360) | - | 4096357..4098735 (+) | 2379 | WP_005677089.1 | TonB-dependent receptor | - |
| I6I54_RS16365 (I6I54_16365) | glmM | 4098847..4100238 (-) | 1392 | WP_005677088.1 | phosphoglucosamine mutase | - |
| I6I54_RS16370 (I6I54_16370) | - | 4100275..4100928 (-) | 654 | WP_005677087.1 | DUF4827 domain-containing protein | - |
| I6I54_RS16375 (I6I54_16375) | - | 4101047..4102084 (-) | 1038 | WP_005677086.1 | bifunctional oligoribonuclease/PAP phosphatase NrnA | - |
| I6I54_RS16380 (I6I54_16380) | - | 4102131..4104260 (-) | 2130 | WP_032837524.1 | ComEC/Rec2 family competence protein | - |
| I6I54_RS16385 (I6I54_16385) | rpe | 4104264..4104914 (-) | 651 | WP_005677081.1 | ribulose-phosphate 3-epimerase | - |
| I6I54_RS16390 (I6I54_16390) | - | 4105193..4105933 (+) | 741 | WP_005677080.1 | TIGR04255 family protein | - |
| I6I54_RS16395 (I6I54_16395) | - | 4105935..4106498 (+) | 564 | WP_005677079.1 | hypothetical protein | - |
| I6I54_RS16400 (I6I54_16400) | - | 4106482..4107108 (+) | 627 | WP_005677078.1 | hypothetical protein | - |
| I6I54_RS16405 (I6I54_16405) | hxsA2 | 4107145..4107402 (-) | 258 | WP_081447299.1 | His-Xaa-Ser repeat protein HxsA2 | - |
| I6I54_RS16410 (I6I54_16410) | hxsC | 4107439..4108581 (-) | 1143 | WP_005677077.1 | His-Xaa-Ser system radical SAM maturase HxsC | - |
| I6I54_RS16415 (I6I54_16415) | hxsB | 4108589..4110013 (-) | 1425 | WP_005677076.1 | His-Xaa-Ser system radical SAM maturase HxsB | - |
| I6I54_RS16420 (I6I54_16420) | hxsD | 4110020..4110352 (-) | 333 | WP_005677074.1 | His-Xaa-Ser system protein HxsD | - |
| I6I54_RS16425 (I6I54_16425) | mobV | 4110682..4111626 (-) | 945 | WP_005677073.1 | MobV family relaxase | - |
| I6I54_RS16430 (I6I54_16430) | - | 4111836..4112252 (+) | 417 | WP_157448285.1 | hypothetical protein | - |
| I6I54_RS18545 | - | 4112322..4112713 (-) | 392 | Protein_3233 | hypothetical protein | - |
| I6I54_RS16445 (I6I54_16445) | - | 4112736..4113968 (-) | 1233 | WP_005677070.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 455 a.a. Molecular weight: 50147.95 Da Isoelectric Point: 6.4039
>NTDB_id=527799 I6I54_RS16340 WP_005677094.1 4091118..4092485(+) (radA) [Bacteroides caccae strain FDAARGOS_1097]
MAKEKTVYVCSNCGQDSPKWVGKCPSCGEWNTYVEEIVRKEPVNRRPVSGIETQKPKPVILSEIIADDEPRINMHDNELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMPEKKILYVSGEESARQLKLRADRLSEVSSDCFIVCETSLEQIYVHI
KNTNPDLVIIDSIQTISTETIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTKKLKIELVPVRKVEEAFRALFG
MAKEKTVYVCSNCGQDSPKWVGKCPSCGEWNTYVEEIVRKEPVNRRPVSGIETQKPKPVILSEIIADDEPRINMHDNELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMPEKKILYVSGEESARQLKLRADRLSEVSSDCFIVCETSLEQIYVHI
KNTNPDLVIIDSIQTISTETIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTKKLKIELVPVRKVEEAFRALFG
Nucleotide
Download Length: 1368 bp
>NTDB_id=527799 I6I54_RS16340 WP_005677094.1 4091118..4092485(+) (radA) [Bacteroides caccae strain FDAARGOS_1097]
ATGGCTAAAGAAAAGACCGTATATGTGTGTAGTAACTGCGGACAGGATTCACCGAAATGGGTAGGCAAATGTCCGTCGTG
CGGAGAATGGAATACGTATGTTGAGGAAATCGTACGGAAAGAGCCGGTTAACCGCCGGCCGGTATCGGGCATAGAAACGC
AAAAGCCCAAGCCGGTTATTCTTAGTGAGATCATAGCGGACGATGAACCGCGAATCAATATGCATGATAATGAACTGAAC
CGCGTACTGGGCGGCGGACTTGTTCCGGGTTCTTTAGTACTGATCGGCGGCGAACCGGGAATCGGAAAATCAACTCTCGT
CATGCAAACCGTACTCCGTATGCCGGAAAAGAAAATCCTTTATGTATCCGGCGAGGAAAGTGCACGGCAATTAAAATTAC
GTGCCGACCGTCTTTCTGAGGTTTCCAGCGACTGCTTCATTGTTTGTGAGACTTCCCTTGAACAGATTTATGTCCATATC
AAAAATACGAATCCGGATTTGGTTATTATCGACTCCATACAGACTATCTCTACGGAAACCATCGAATCGTCTCCCGGAAG
TATCGCTCAGGTCAGAGAGTGTTCGGCATCTATCCTACGTTTCGCAAAGGAGACTCATACGCCGGTCTTGCTTATCGGAC
ATATAAATAAAGAAGGGAGCATTGCAGGCCCCAAGGTGCTGGAACATATCGTTGATACAGTTCTCCAATTTGAAGGTGAC
CAACATTATATGTACCGTATTTTACGCAGTATCAAGAATCGCTTCGGTAGTACGGCCGAACTGGGTATTTATGAGATGCG
GCAGGACGGGCTACGCCAGGTGAGCAATCCTTCGGAACTACTGCTTAGCCAAGACCATGAAGGAATGAGCGGAGTAGCAA
TCGCTTCTGCTATCGAAGGAGTACGTCCCTTCCTGATTGAGACTCAGGCTCTGGTAAGCTCCGCTGTTTATGGTAATCCC
CAACGTTCGGCAACCGGATTTGATATACGAAGAATGAATATGCTTCTGGCCGTCCTCGAAAAACGTGTCGGGTTCAAGCT
TGCACAGAAAGATGTATTTCTGAATATCGCCGGAGGACTGAAAGTGAATGACCCGGCCATCGACCTCGCAGTTATCAGTG
CCATTCTTTCTTCAAATATGGATGCAGCTATCGAACCGGAAGTCTGTATGGCAGGAGAAATCGGTTTGTCGGGAGAGATA
CGTCCGGTGAACCGGATTGAACAACGTATCGGAGAGGCCGAGAAGCTTGGCTTCAAGCGTTTCCTGTTGCCCAAATATAA
TTTGCAAGGCATTGATACGAAGAAGCTAAAGATAGAGTTAGTGCCCGTAAGAAAGGTAGAAGAGGCGTTCAGGGCGTTAT
TCGGATAA
ATGGCTAAAGAAAAGACCGTATATGTGTGTAGTAACTGCGGACAGGATTCACCGAAATGGGTAGGCAAATGTCCGTCGTG
CGGAGAATGGAATACGTATGTTGAGGAAATCGTACGGAAAGAGCCGGTTAACCGCCGGCCGGTATCGGGCATAGAAACGC
AAAAGCCCAAGCCGGTTATTCTTAGTGAGATCATAGCGGACGATGAACCGCGAATCAATATGCATGATAATGAACTGAAC
CGCGTACTGGGCGGCGGACTTGTTCCGGGTTCTTTAGTACTGATCGGCGGCGAACCGGGAATCGGAAAATCAACTCTCGT
CATGCAAACCGTACTCCGTATGCCGGAAAAGAAAATCCTTTATGTATCCGGCGAGGAAAGTGCACGGCAATTAAAATTAC
GTGCCGACCGTCTTTCTGAGGTTTCCAGCGACTGCTTCATTGTTTGTGAGACTTCCCTTGAACAGATTTATGTCCATATC
AAAAATACGAATCCGGATTTGGTTATTATCGACTCCATACAGACTATCTCTACGGAAACCATCGAATCGTCTCCCGGAAG
TATCGCTCAGGTCAGAGAGTGTTCGGCATCTATCCTACGTTTCGCAAAGGAGACTCATACGCCGGTCTTGCTTATCGGAC
ATATAAATAAAGAAGGGAGCATTGCAGGCCCCAAGGTGCTGGAACATATCGTTGATACAGTTCTCCAATTTGAAGGTGAC
CAACATTATATGTACCGTATTTTACGCAGTATCAAGAATCGCTTCGGTAGTACGGCCGAACTGGGTATTTATGAGATGCG
GCAGGACGGGCTACGCCAGGTGAGCAATCCTTCGGAACTACTGCTTAGCCAAGACCATGAAGGAATGAGCGGAGTAGCAA
TCGCTTCTGCTATCGAAGGAGTACGTCCCTTCCTGATTGAGACTCAGGCTCTGGTAAGCTCCGCTGTTTATGGTAATCCC
CAACGTTCGGCAACCGGATTTGATATACGAAGAATGAATATGCTTCTGGCCGTCCTCGAAAAACGTGTCGGGTTCAAGCT
TGCACAGAAAGATGTATTTCTGAATATCGCCGGAGGACTGAAAGTGAATGACCCGGCCATCGACCTCGCAGTTATCAGTG
CCATTCTTTCTTCAAATATGGATGCAGCTATCGAACCGGAAGTCTGTATGGCAGGAGAAATCGGTTTGTCGGGAGAGATA
CGTCCGGTGAACCGGATTGAACAACGTATCGGAGAGGCCGAGAAGCTTGGCTTCAAGCGTTTCCTGTTGCCCAAATATAA
TTTGCAAGGCATTGATACGAAGAAGCTAAAGATAGAGTTAGTGCCCGTAAGAAAGGTAGAAGAGGCGTTCAGGGCGTTAT
TCGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
51.522 |
100 |
0.521 |
| radA | Streptococcus mitis SK321 |
48.132 |
100 |
0.481 |
| radA | Streptococcus pneumoniae Rx1 |
48.132 |
100 |
0.481 |
| radA | Streptococcus pneumoniae D39 |
48.132 |
100 |
0.481 |
| radA | Streptococcus pneumoniae R6 |
48.132 |
100 |
0.481 |
| radA | Streptococcus pneumoniae TIGR4 |
48.132 |
100 |
0.481 |
| radA | Streptococcus mitis NCTC 12261 |
48.132 |
100 |
0.481 |