Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   K7B13_RS18160 Genome accession   NZ_CP082278
Coordinates   3536617..3537747 (-) Length   376 a.a.
NCBI ID   WP_065982539.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 35M     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3531617..3542747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS18125 (K7B13_18125) - 3531757..3532398 (-) 642 WP_212099617.1 NAD(P)-dependent oxidoreductase -
  K7B13_RS18130 (K7B13_18130) - 3532463..3532867 (-) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  K7B13_RS18135 (K7B13_18135) ureC 3533009..3534718 (-) 1710 WP_065982535.1 urease subunit alpha -
  K7B13_RS18140 (K7B13_18140) ureB 3534715..3535089 (-) 375 WP_212099620.1 urease subunit beta -
  K7B13_RS18145 (K7B13_18145) ureA 3535086..3535403 (-) 318 WP_013353896.1 urease subunit gamma -
  K7B13_RS18150 (K7B13_18150) - 3535753..3535941 (-) 189 WP_014472339.1 CsbD family protein -
  K7B13_RS18155 (K7B13_18155) - 3536015..3536494 (-) 480 WP_065982538.1 hypothetical protein -
  K7B13_RS18160 (K7B13_18160) rapC 3536617..3537747 (-) 1131 WP_065982539.1 tetratricopeptide repeat protein Regulator
  K7B13_RS18165 (K7B13_18165) moaA 3537937..3538962 (-) 1026 WP_115996680.1 GTP 3',8-cyclase MoaA -
  K7B13_RS18170 (K7B13_18170) fdhD 3538980..3539768 (-) 789 WP_115996678.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  K7B13_RS18175 (K7B13_18175) - 3539863..3540027 (-) 165 WP_190277775.1 hypothetical protein -
  K7B13_RS18180 (K7B13_18180) - 3540113..3540793 (-) 681 WP_014471147.1 VWA domain-containing protein -
  K7B13_RS18185 (K7B13_18185) - 3541102..3541791 (-) 690 WP_115996676.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44906.03 Da        Isoelectric Point: 5.4440

>NTDB_id=527794 K7B13_RS18160 WP_065982539.1 3536617..3537747(-) (rapC) [Bacillus amyloliquefaciens strain 35M]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPDFTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDQNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYIKHDFYRVRRIQCHFVISGNYIDCKNYDKALDHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDEAALAYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNKKSLYVYIEDFALEAAIYTSAHKQYKEAAYFYEQAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=527794 K7B13_RS18160 WP_065982539.1 3536617..3537747(-) (rapC) [Bacillus amyloliquefaciens strain 35M]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGGATGGAGGAAGACCAGCTGCTGCTGCTGTATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGATTTCACCGAACAATCACAAATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCAGAATAACTATGTTGCAGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACATATATAAAACACGATTTTTACAGAGTGCGGAGGATTCAATGCCATTTCGTCATCTC
AGGAAACTATATCGACTGCAAAAACTACGACAAAGCGCTCGATCATTTAGATGAAGCGCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGTTACTTTAGAAAAGCGGTTCCCGTTTTTGAGGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACACA
CACCCTTTTCAGGCTGCATGATGACGAAGCGGCCCTTGCCTATTATGAAAGAGGGGTTATGATCGCGAAAGAACGCGGCG
ACCGATTCAGTTTAGAGAAATATAAGTTTTTACAAGCGCTTTATCTGGAATCCCTCAATATGGACTTAATCCACGAAGTG
TTTGATTATATGAATAAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCATTTACACAAGCGCCCA
TAAGCAATATAAAGAAGCGGCGTATTTTTATGAACAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAATGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)

Tetratricopeptide repeat (TPR_12)

(192-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.368

100

0.428
  rapF Bacillus subtilis subsp. subtilis str. 168

40.267

99.734

0.402