Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   I6I58_RS05665 Genome accession   NZ_CP068172
Coordinates   1079174..1080094 (+) Length   306 a.a.
NCBI ID   WP_074692658.1    Uniprot ID   -
Organism   Campylobacter lari strain FDAARGOS_1101     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1059692..1088581 1079174..1080094 within 0


Gene organization within MGE regions


Location: 1059692..1088581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I58_RS05570 (I6I58_05570) - 1059692..1061386 (-) 1695 WP_074692904.1 ABC transporter ATP-binding protein -
  I6I58_RS05575 (I6I58_05575) galE 1061380..1062366 (-) 987 WP_039626879.1 UDP-glucose 4-epimerase GalE -
  I6I58_RS05580 (I6I58_05580) - 1062425..1063204 (-) 780 WP_074692813.1 3'-5' exonuclease -
  I6I58_RS05585 (I6I58_05585) waaC 1063271..1064290 (+) 1020 WP_074692812.1 lipopolysaccharide heptosyltransferase I -
  I6I58_RS05590 (I6I58_05590) - 1064287..1065159 (+) 873 WP_074692810.1 lipid A biosynthesis lauroyl acyltransferase -
  I6I58_RS05595 (I6I58_05595) - 1065168..1066715 (+) 1548 WP_074692808.1 glycosyltransferase -
  I6I58_RS05600 (I6I58_05600) - 1066712..1067767 (+) 1056 WP_074692807.1 glycosyltransferase family 4 protein -
  I6I58_RS05605 (I6I58_05605) - 1067756..1068961 (-) 1206 WP_074692805.1 glycosyltransferase family 8 protein -
  I6I58_RS07985 (I6I58_05610) - 1068942..1069901 (-) 960 WP_074692804.1 glycosyltransferase family 2 protein -
  I6I58_RS05615 (I6I58_05615) - 1069903..1070799 (-) 897 WP_074693079.1 polysaccharide pyruvyl transferase family protein -
  I6I58_RS05620 (I6I58_05620) - 1070873..1071724 (+) 852 WP_172461672.1 alpha-2,3-sialyltransferase -
  I6I58_RS05625 (I6I58_05625) - 1071735..1072745 (+) 1011 WP_074693082.1 NAD-dependent 4,6-dehydratase LegB -
  I6I58_RS05630 (I6I58_05630) - 1072753..1073316 (+) 564 WP_074693083.1 NeuD/PglB/VioB family sugar acetyltransferase -
  I6I58_RS05635 (I6I58_05635) - 1073319..1074440 (+) 1122 WP_074693091.1 N-acetyl sugar amidotransferase -
  I6I58_RS05640 (I6I58_05640) neuB 1074427..1075437 (+) 1011 WP_074693085.1 N-acetylneuraminate synthase -
  I6I58_RS05645 (I6I58_05645) neuC 1075427..1076587 (+) 1161 WP_115613999.1 UDP-N-acetylglucosamine 2-epimerase -
  I6I58_RS05650 (I6I58_05650) - 1076584..1077615 (+) 1032 WP_074693088.1 nucleotidyltransferase family protein -
  I6I58_RS05655 (I6I58_05655) - 1077602..1078318 (+) 717 WP_074693089.1 cytidylyltransferase domain-containing protein -
  I6I58_RS05660 (I6I58_05660) - 1078315..1079121 (-) 807 WP_115613998.1 glycosyltransferase family 2 protein -
  I6I58_RS05665 (I6I58_05665) waaF 1079174..1080094 (+) 921 WP_074692658.1 lipopolysaccharide heptosyltransferase II Regulator
  I6I58_RS05670 (I6I58_05670) - 1080095..1081597 (+) 1503 WP_074692660.1 MBOAT family protein -
  I6I58_RS05675 (I6I58_05675) - 1081606..1081755 (+) 150 WP_159427735.1 hypothetical protein -
  I6I58_RS05680 (I6I58_05680) - 1081818..1082762 (+) 945 WP_081352035.1 hypothetical protein -
  I6I58_RS05685 (I6I58_05685) - 1082854..1083156 (+) 303 WP_012661929.1 HU family DNA-binding protein -
  I6I58_RS05690 (I6I58_05690) cysK 1083252..1084154 (+) 903 WP_074692661.1 cysteine synthase A -
  I6I58_RS05695 (I6I58_05695) - 1084167..1085552 (+) 1386 WP_074692663.1 replicative DNA helicase -
  I6I58_RS05700 (I6I58_05700) tpx 1085549..1086067 (-) 519 WP_074692664.1 thiol peroxidase -
  I6I58_RS05705 (I6I58_05705) mgtE 1086079..1087422 (-) 1344 WP_070256456.1 magnesium transporter -
  I6I58_RS05710 (I6I58_05710) - 1087424..1088581 (-) 1158 WP_070256459.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34685.85 Da        Isoelectric Point: 10.3366

>NTDB_id=527778 I6I58_RS05665 WP_074692658.1 1079174..1080094(+) (waaF) [Campylobacter lari strain FDAARGOS_1101]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYKQILKARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEEALNFKVASNSLKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSHTHKILIFGVESEKKICDEIENLLLNDGIKAKNLCGKTSIFTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVVNLARNFSGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=527778 I6I58_RS05665 WP_074692658.1 1079174..1080094(+) (waaF) [Campylobacter lari strain FDAARGOS_1101]
ATGAATATTTTTATCAACCTTCCCACTTGGCTTGGCGATGCAGTAATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGCACAGAGCTTTTTAAACGTTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAACAAATTTTAAAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAGAAGCTTTAAATTTTAAAGTAGCTTCAAATTCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATCCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAGGCAAGCTATTTTGCAAGGGTTGCAAAAGAATTTAGCCATACCCATAAAATTTTAATTTTTGGCGTAGAAAGTGAAAA
AAAAATTTGCGATGAAATAGAAAATTTATTATTAAATGATGGTATAAAAGCTAAGAATTTATGTGGAAAAACTAGTATTT
TTACTCTTTGTAAAAATATATCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGGGTAAAAACAGTGGCTGTTTTTGGTTCTACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
AAGTGGTAGTAAATTTAGCAAGAAATTTTTCAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.537

100

0.66