Detailed information NTG0527770

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: I6I58_RS02015
• Genome accession: NZ_CP068172
• Coordinates: 373671..375062 (-)
• Length: 463 a.a.
• NCBI ID: WP_074692605.1
• Uniprot ID: -
• Organism: Campylobacter lari strain FDAARGOS_1101
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 368671..380062

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6I58_RS01990 (I6I58_01990)	-	369214..369963 (+)	750	WP_074692598.1	TIGR02757 family protein	-
I6I58_RS01995 (I6I58_01995)	-	369948..370700 (+)	753	WP_074692600.1	TSUP family transporter	-
I6I58_RS02000 (I6I58_02000)	-	370697..371857 (-)	1161	WP_074692601.1	type II secretion system F family protein	-
I6I58_RS02005 (I6I58_02005)	-	371854..373368 (-)	1515	WP_074692603.1	GspE/PulE family protein	-
I6I58_RS02010 (I6I58_02010)	-	373361..373690 (-)	330	WP_012661132.1	hypothetical protein	-
I6I58_RS02015 (I6I58_02015)	ctsD	373671..375062 (-)	1392	WP_074692605.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
I6I58_RS02020 (I6I58_02020)	-	375034..375339 (-)	306	WP_041570266.1	hypothetical protein	-
I6I58_RS02025 (I6I58_02025)	nifJ	375361..378915 (-)	3555	WP_070255998.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
I6I58_RS02030 (I6I58_02030)	-	379033..379677 (-)	645	WP_012661128.1	HAD family hydrolase	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52523.36 Da
• Isoelectric Point: 7.9605

>NTDB_id=527770 I6I58_RS02015 WP_074692605.1 373671..375062(-) (ctsD) [Campylobacter lari strain FDAARGOS_1101]
MKKIIFLFISILSFTNIFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFDFWEKIA
EEIQALLDENTTKPIINTNAGIITLNATLYELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=527770 I6I58_RS02015 WP_074692605.1 373671..375062(-) (ctsD) [Campylobacter lari strain FDAARGOS_1101]
ATGAAAAAAATAATATTTTTATTCATTAGTATTTTAAGTTTTACAAATATTTTTGCTTCGCAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGATTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGCTCTATTAGAGAAGGGCAAAGCATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AGGGTGATTATGATAGTGCTAAAGAAGCAGATAATTTAGTCATTAGTACAGATAAATTTGATTTTTGGGAGAAAATTGCA
GAAGAAATTCAAGCTTTACTTGATGAAAATACTACTAAGCCCATTATTAATACCAATGCGGGAATTATTACTTTAAATGC
TACCTTGTATGAGCTTGCAAGAGTTGAAAAATATCTAAAAGACTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGCCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAAAAATATTAATCTTAAAGCTAATGTTGAAACTAAGGCAATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTACTTTCTAACCCAAAACTCATGGCACTTAATAATCAGCAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATCATGCTTAG
GATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCACCAGATA
CTATACAAAAAAAGCTTTCTACTGTAGTTGAAGTGGATGATGGGCAAACTTTAATTTTGGGTGGATTGATTAGCAAAAAT
ACGATTAGTAATCATAATGAAGTAAGTGCTTTATCTAAAATACCACTTTTTGGTGCCTTGTTTCAAGGAAAGCAAAATTT
AGAAGATATTAGTGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTGAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	57.051	100	0.577