Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I6I61_RS15015 Genome accession   NZ_CP068171
Coordinates   3220279..3221388 (+) Length   369 a.a.
NCBI ID   WP_130915437.1    Uniprot ID   -
Organism   Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3215279..3226388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I61_RS14985 (I6I61_14985) uraH 3215296..3215703 (+) 408 WP_089744590.1 hydroxyisourate hydrolase -
  I6I61_RS14990 (I6I61_14990) sufC 3215735..3216478 (+) 744 WP_130914655.1 Fe-S cluster assembly ATPase SufC -
  I6I61_RS17395 - 3216509..3216754 (+) 246 WP_262708492.1 four helix bundle protein -
  I6I61_RS17400 - 3216751..3216906 (+) 156 WP_262708491.1 hypothetical protein -
  I6I61_RS15000 (I6I61_15000) sufD 3216955..3218259 (+) 1305 WP_130914654.1 Fe-S cluster assembly protein SufD -
  I6I61_RS15005 (I6I61_15005) - 3218393..3219322 (-) 930 WP_130914653.1 DUF3078 domain-containing protein -
  I6I61_RS15010 (I6I61_15010) - 3219482..3220249 (+) 768 WP_130914652.1 rhomboid family intramembrane serine protease -
  I6I61_RS15015 (I6I61_15015) dprA 3220279..3221388 (+) 1110 WP_130915437.1 DNA-processing protein DprA Machinery gene
  I6I61_RS15020 (I6I61_15020) gdhA 3221581..3222939 (+) 1359 WP_130914651.1 NADP-specific glutamate dehydrogenase -
  I6I61_RS15025 (I6I61_15025) - 3223127..3223429 (+) 303 WP_130914650.1 iron chaperone -
  I6I61_RS15030 (I6I61_15030) - 3223506..3223994 (-) 489 WP_130914649.1 YkgJ family cysteine cluster protein -
  I6I61_RS17445 - 3223975..3224208 (-) 234 WP_317191994.1 hypothetical protein -
  I6I61_RS17450 - 3224580..3224963 (-) 384 Protein_2938 ion channel -
  I6I61_RS15040 (I6I61_15040) - 3225083..3225463 (+) 381 WP_130914648.1 group III truncated hemoglobin -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41350.12 Da        Isoelectric Point: 7.4506

>NTDB_id=527765 I6I61_RS15015 WP_130915437.1 3220279..3221388(+) (dprA) [Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104]
MYKEEHLYSVALRQCSYIGDIIFSKLVRTFGSAKNVWETSKKDLAQVDGIGKKTVSDIGNPEHLKFAEKELQFCGKNDIR
INLRHQKDFPFLLNECDDAPAILYQKGIFDPDLKCVSIVGTRNMTSYGKKFIEDFFTETKNSRYQSISGLALGVDKEVHE
YSMENGIPTTAVLAHGFHTLYPSKNRKLSEKILEENGALLTEFNTTRKPDRENFIQRNRIVAGISPATIVVETAFGGGSV
STAAFANGYNRDVYALPGKITDKYSQGCNQLIFQHKATAISTIKDLIESLGFHQSSETIGELFPQSTVSIRLTENQEEIY
RSILANPYISLDDLAEKKSLPSHKILPIILELELLGKVKSFSGRQFTAL

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=527765 I6I61_RS15015 WP_130915437.1 3220279..3221388(+) (dprA) [Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104]
ATGTATAAAGAAGAACATCTCTATTCTGTCGCTTTAAGGCAGTGCAGTTATATAGGCGACATCATATTCAGCAAACTGGT
AAGAACTTTCGGCAGCGCAAAAAATGTTTGGGAGACTTCTAAAAAAGACCTTGCTCAAGTTGACGGGATTGGAAAAAAAA
CAGTTTCGGATATTGGCAATCCTGAACACCTGAAATTTGCTGAAAAAGAATTACAATTTTGCGGGAAAAATGATATCCGC
ATCAATTTACGGCACCAGAAAGACTTTCCGTTTCTGCTGAATGAATGTGATGATGCTCCTGCAATTTTATATCAAAAAGG
AATTTTTGATCCTGATTTAAAATGCGTAAGCATTGTGGGAACAAGAAATATGACTTCTTACGGAAAAAAATTTATTGAAG
ATTTTTTTACTGAAACAAAAAACAGCAGATATCAGTCAATAAGCGGTTTAGCATTAGGCGTTGATAAAGAGGTACATGAA
TATTCTATGGAGAATGGCATTCCCACTACAGCCGTTTTAGCTCACGGGTTTCATACTTTATATCCCTCAAAAAACAGAAA
ACTTTCAGAAAAAATTCTAGAAGAAAACGGAGCTTTACTTACCGAGTTTAATACCACCCGGAAACCTGACCGGGAAAATT
TCATCCAAAGAAACAGGATTGTTGCAGGAATTTCACCAGCTACAATTGTGGTAGAAACAGCATTTGGAGGTGGATCTGTG
AGCACAGCAGCATTTGCAAACGGCTATAATCGTGATGTATACGCACTTCCGGGAAAAATTACAGACAAATATAGCCAGGG
ATGCAATCAGCTTATATTCCAGCACAAAGCTACTGCCATTTCTACTATTAAGGATCTTATAGAATCTTTAGGTTTTCATC
AGTCGTCGGAGACTATAGGTGAGCTTTTTCCTCAGAGTACAGTTTCAATTCGGCTTACGGAAAATCAAGAAGAAATATAC
AGATCAATTTTAGCTAATCCTTATATAAGCTTAGATGATTTAGCTGAAAAAAAATCCCTGCCTTCACATAAAATCTTACC
TATAATTCTTGAACTTGAGCTTTTAGGTAAAGTAAAATCATTTTCAGGGAGGCAATTTACTGCTTTGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.372

99.187

0.539