Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I61_RS13510 Genome accession   NZ_CP068171
Coordinates   2893000..2894349 (+) Length   449 a.a.
NCBI ID   WP_130914877.1    Uniprot ID   -
Organism   Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2888000..2899349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I61_RS13495 (I6I61_13495) aroQ 2888067..2888486 (+) 420 WP_130914879.1 type II 3-dehydroquinate dehydratase -
  I6I61_RS13500 (I6I61_13500) yidC 2888541..2890358 (-) 1818 WP_089744199.1 membrane protein insertase YidC -
  I6I61_RS13505 (I6I61_13505) - 2890572..2892179 (-) 1608 WP_130914878.1 CTP synthase -
  I6I61_RS13510 (I6I61_13510) radA 2893000..2894349 (+) 1350 WP_130914877.1 DNA repair protein RadA Machinery gene
  I6I61_RS13515 (I6I61_13515) - 2894467..2896005 (+) 1539 WP_130914876.1 zinc-dependent metalloprotease -
  I6I61_RS13520 (I6I61_13520) - 2896092..2896685 (+) 594 WP_130914875.1 ACP phosphodiesterase -
  I6I61_RS13525 (I6I61_13525) - 2896687..2897187 (-) 501 WP_130914874.1 DUF6702 family protein -
  I6I61_RS13530 (I6I61_13530) - 2897184..2897486 (-) 303 WP_130914873.1 hypothetical protein -
  I6I61_RS13535 (I6I61_13535) - 2897446..2897712 (-) 267 WP_130914872.1 hypothetical protein -
  I6I61_RS13540 (I6I61_13540) - 2897780..2898358 (+) 579 WP_130914871.1 HupE/UreJ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49805.42 Da        Isoelectric Point: 6.2761

>NTDB_id=527763 I6I61_RS13510 WP_130914877.1 2893000..2894349(+) (radA) [Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104]
MAKLKTAYFCQNCGSQYPQWTGQCKNCGEWNTLVEEVVEKTSSKTPPFSKSKQHVINIIEVEAIEEPRIKTPSDELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLAEIKNPNCFLFTETNLEKILHEAKKL
EPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
CTGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEQFCFAGEIGLSGEIRPV
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIQIEEVSKVEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=527763 I6I61_RS13510 WP_130914877.1 2893000..2894349(+) (radA) [Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104]
ATGGCAAAACTCAAAACAGCATATTTCTGTCAGAACTGCGGTTCGCAATACCCGCAATGGACAGGACAGTGCAAAAACTG
CGGAGAATGGAACACCTTAGTAGAAGAAGTCGTTGAAAAAACCTCCTCAAAAACTCCCCCTTTTTCAAAATCCAAACAAC
ATGTCATCAATATCATTGAAGTAGAAGCTATTGAAGAGCCAAGAATAAAAACTCCTTCCGATGAGCTGAACCGGGTTTTG
GGAGGCGGAATCGTTTTGGGATCTGTTACTTTGATCGGTGGCGAACCTGGAATCGGGAAATCTACCCTGCTCCTCCAGCT
TGCCCTGAAAATGAAGAAAAAAATCTTCTATGTTTCCGGGGAAGAGAGTGCTTCGCAAATCAAAATGAGAGCCGATCGTT
TGGCGGAAATAAAAAATCCCAACTGCTTTCTCTTTACAGAAACGAATCTGGAAAAAATTCTTCATGAAGCCAAAAAACTG
GAGCCTGATTTTGTCATTATTGATTCCATTCAGACTTTGCAGTCACAGCTAATTGAAAGCTCACCCGGAACCGTATCTCA
GATTCGGGAATGCTCTAATGAAATCATCAAATACGCCAAAGAAAATAATGTGCCTGTATTTTTGGTGGGTCACATCACAA
AAGACGGACAAATTGCAGGTCCGAAAGTCCTGGAACACATGGTAGATGTGGTATTGAACTTTGATGGCGACAGAAATCAT
CTTTTCCGATTATTGAGAGCCAATAAAAACCGTTTCGGCTCAACTTCAGAGATCGGAATTTATGAGATGATCTCACAAGG
CTTAAAAGAAATAAAAAATCCGTCTGAAATTTTAATTACCAAAAAATTTGAAGAGCTTTCCGGAAATTCTGTGGCAGTAA
CACTGGAAGGAAACCGTCCGATGCTTTTGGAAATTCAGGCCTTGGTAAGTACCGCAGTTTATGGAACTCCGCAAAGAAGC
TGCACCGGCTTTGATGCTAAAAGACTCAATATGCTTTTGGCTGTTCTGGAAAAAAGAGCAGGCTTCCAATTGGGAGCAAA
AGACGTTTTCCTGAATATTACAGGCGGTATCAAAACCGATGATCCCGCTCTGGATCTGGCGGTTGTAGCATCTATTCTAT
CTTCTAACGAAGACATTGCGATTTCTGAACAGTTTTGCTTCGCTGGAGAAATAGGTTTAAGCGGAGAAATACGACCTGTT
GCACAAGTTGAACAGAGAATTACAGAAGCTGAAAAACTGGGCTATGAAAAGATTTTTGTTTCTAATCTGAATAAAATTCC
CAAAAGAAAATTCGGGATCCAAATTGAAGAAGTGAGCAAAGTTGAGGATTTTCATGAAAGACTATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

AAA domain (AAA_25)

(67-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.491

100

0.501
  radA Streptococcus pneumoniae Rx1

48.491

100

0.501
  radA Streptococcus pneumoniae D39

48.491

100

0.501
  radA Streptococcus pneumoniae TIGR4

48.491

100

0.501
  radA Streptococcus mitis NCTC 12261

48.491

100

0.501
  radA Bacillus subtilis subsp. subtilis str. 168

49.336

100

0.497
  radA Streptococcus mitis SK321

48.268

100

0.497