Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   K7B13_RS11050 Genome accession   NZ_CP082278
Coordinates   2213999..2215489 (-) Length   496 a.a.
NCBI ID   WP_212098337.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 35M     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2208999..2220489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS11020 (K7B13_11020) gudB 2209074..2210348 (-) 1275 WP_065522848.1 NAD-specific glutamate dehydrogenase -
  K7B13_RS11025 (K7B13_11025) - 2210510..2211094 (-) 585 WP_065981782.1 genetic competence negative regulator -
  K7B13_RS11030 (K7B13_11030) - 2211246..2212034 (-) 789 WP_212098328.1 metallophosphoesterase -
  K7B13_RS11035 (K7B13_11035) - 2212121..2212579 (-) 459 WP_013352708.1 YpbF family protein -
  K7B13_RS11040 (K7B13_11040) - 2212643..2213419 (-) 777 WP_212098331.1 LysM peptidoglycan-binding domain-containing protein -
  K7B13_RS11045 (K7B13_11045) - 2213397..2213984 (-) 588 WP_212098334.1 CPBP family intramembrane glutamic endopeptidase -
  K7B13_RS11050 (K7B13_11050) recS 2213999..2215489 (-) 1491 WP_212098337.1 ATP-dependent DNA helicase RecQ Machinery gene
  K7B13_RS11055 (K7B13_11055) - 2215482..2216540 (-) 1059 WP_212098340.1 helix-turn-helix domain-containing protein -
  K7B13_RS11060 (K7B13_11060) - 2216810..2217058 (+) 249 WP_003153403.1 ferredoxin -
  K7B13_RS11065 (K7B13_11065) - 2217196..2217828 (-) 633 WP_076983238.1 ECF transporter S component -
  K7B13_RS11070 (K7B13_11070) serA 2218258..2219835 (+) 1578 WP_212098343.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56117.00 Da        Isoelectric Point: 5.6568

>NTDB_id=527740 K7B13_RS11050 WP_212098337.1 2213999..2215489(-) (recS) [Bacillus amyloliquefaciens strain 35M]
MTELHKALYQNFGLHSFKKGQEEIITSVLQKKDTIAMLPTGGGKSLCYQLPGYIMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSDERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAVEHLADNAEKISRVTELAEKLEGPGIVYCPTRKW
AEELAAELNENTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGRPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILTVIRDAGTSDERKLRDVLISNGVQETQARTAIHLYLQGKTT
KEQLQEELTYRVEKKLHKMNRFSALLERKECIREALLAYFDESYEPEGQTGQCCSSCGIDLAPYEQKGERKNMERFEDWK
LELDRIFGLESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=527740 K7B13_RS11050 WP_212098337.1 2213999..2215489(-) (recS) [Bacillus amyloliquefaciens strain 35M]
ATGACTGAGCTGCACAAAGCTTTATACCAGAATTTTGGTTTGCATTCGTTTAAAAAAGGGCAGGAAGAAATCATCACCAG
CGTGCTTCAAAAAAAGGATACGATTGCCATGCTTCCGACAGGCGGGGGGAAATCATTATGCTATCAGCTTCCGGGTTACA
TAATGGACGGGCTGGTACTGATTATTTCACCTCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCTGACGAGCGGCATTTTATCCTCAGCAACATCAGCCGTTACAA
ATTTCTTTATATGTCTCCTGAAGCCCTCTCGTCACCTTATGTGCTGAACCGTTTGAAAAACGTCCCGGTCAGTTTATTTG
TCATTGATGAGGCTCATTGCATATCAGAGTGGGGACATGATTTCAGGCCTGATTATTCAAAGCTCGGACCTTTCAGACAA
GCACTCGGCAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACGAAAGAAACGCTCAGGGATGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGCCATCTATATTCGGTCAACCGGCCGAATATTCTCTTGGCGGTTGAACATTTGGCTGATAATG
CCGAAAAAATCAGCAGGGTCACAGAGCTTGCTGAAAAGCTCGAGGGCCCGGGCATCGTATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCCGAGCTAAACGAAAATACGGGAAAGCGGACGGATTATTATCACGGGGGAATGGATACAGGAGA
CAGGATATTAATTCAGCAGCAATTTATCCATAACCAGCTTGATTGCATTTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCTGATATCCGCTTTGTTATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGAAGAGCG
GGCCGCGACGGCAGACCGAGTGTCAGTATTTTGCTGAGAGCGCCGGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGTTTGTCCGATTACGACCTGGAAGGTATTCTGACCGTCATACGGGACGCCGGTACGAGCGATGAGCGAAAGCTTC
GGGACGTTCTGATAAGTAACGGCGTTCAGGAAACACAGGCGCGAACGGCCATCCACCTGTACCTGCAAGGAAAAACCACT
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAAAAGCTGCATAAAATGAACCGTTTTTCGGCGTTATTGGA
GCGGAAAGAATGTATAAGAGAAGCGCTATTAGCTTACTTTGATGAATCGTATGAGCCTGAAGGTCAAACCGGGCAATGCT
GCAGCAGCTGCGGAATTGATCTGGCCCCATACGAGCAAAAAGGAGAACGGAAAAACATGGAGCGGTTTGAAGATTGGAAG
CTGGAATTAGACCGGATTTTCGGTTTAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(216-323)

DEAD/DEAH box helicase (DEAD)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

69.758

100

0.698