Detailed information NTG0527670

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: K7B13_RS01555
• Genome accession: NZ_CP082278
• Coordinates: 311009..312130 (+)
• Length: 373 a.a.
• NCBI ID: WP_212100209.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain 35M
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 306009..317130

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K7B13_RS01535 (K7B13_01535)	-	306320..307315 (-)	996	WP_212100197.1	DUF5105 domain-containing protein	-
K7B13_RS01540 (K7B13_01540)	-	307443..308840 (+)	1398	WP_212100200.1	YcdB/YcdC domain-containing protein	-
K7B13_RS01545 (K7B13_01545)	-	309041..310399 (+)	1359	WP_212100203.1	YcdB/YcdC domain-containing protein	-
K7B13_RS01550 (K7B13_01550)	-	310396..310899 (-)	504	WP_212100206.1	M15 family metallopeptidase	-
K7B13_RS01555 (K7B13_01555)	rapF	311009..312130 (+)	1122	WP_212100209.1	tetratricopeptide repeat protein	Regulator
K7B13_RS01560 (K7B13_01560)	-	312244..313023 (+)	780	WP_115998259.1	glucose 1-dehydrogenase	-
K7B13_RS01565 (K7B13_01565)	-	313106..314785 (+)	1680	WP_212100212.1	alpha-glucosidase	-
K7B13_RS01570 (K7B13_01570)	-	314979..315938 (+)	960	WP_212100214.1	metal ABC transporter substrate-binding protein	-
K7B13_RS01575 (K7B13_01575)	-	315993..316688 (+)	696	WP_014469701.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44323.48 Da
• Isoelectric Point: 5.0752

>NTDB_id=527670 K7B13_RS01555 WP_212100209.1 311009..312130(+) (rapF) [Bacillus amyloliquefaciens strain 35M]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMVDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFQQVIQAVFSLTHIYFKTERYSDAAASYARGMKSAAEWEDEIYMTKFRLIKELYQGDGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=527670 K7B13_RS01555 WP_212100209.1 311009..312130(+) (rapF) [Bacillus amyloliquefaciens strain 35M]
ATGAAATCCAAGATTCCATCTGAAGAAGTAGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTATTGTATTTTT
CATTGATGGAATTTAGGCATCGCATCATGGTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAACGGGCTGAGGAAAAACTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAAGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGTAATTTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTTGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTTTGGGTGACTTTTGCAAGGCGGCG
GAAGACTTTGAACGAGCGGCTGCCGGTTTTGAAGCGCACAGCTTCCAGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAGATACAGTGACGCCGCCGCCAGCTACGCGCGGGGCATGAAAAGCGCGGCGGAGTGGGAAG
ACGAGATCTATATGACAAAATTCCGTCTGATAAAGGAGCTTTATCAGGGTGACGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAGGAACTGTTGGCTGACACTGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAATTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.049	99.464	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	39.785	99.732	0.397