Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BAJP3042_RS17700 Genome accession   NZ_CP082243
Coordinates   3649347..3650477 (-) Length   376 a.a.
NCBI ID   WP_222835441.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3644347..3655477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS17670 (BAJP3042_17670) - 3645191..3645595 (-) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  BAJP3042_RS17675 (BAJP3042_17675) ureC 3645736..3647445 (-) 1710 WP_222835440.1 urease subunit alpha -
  BAJP3042_RS17680 (BAJP3042_17680) ureB 3647442..3647816 (-) 375 WP_012118652.1 urease subunit beta -
  BAJP3042_RS17685 (BAJP3042_17685) ureA 3647813..3648130 (-) 318 WP_007407581.1 urease subunit gamma -
  BAJP3042_RS17690 (BAJP3042_17690) - 3648484..3648672 (-) 189 WP_012118653.1 CsbD family protein -
  BAJP3042_RS17695 (BAJP3042_17695) - 3648747..3649226 (-) 480 WP_007407583.1 hypothetical protein -
  BAJP3042_RS17700 (BAJP3042_17700) rapC 3649347..3650477 (-) 1131 WP_222835441.1 tetratricopeptide repeat protein Regulator
  BAJP3042_RS17705 (BAJP3042_17705) moaA 3650667..3651692 (-) 1026 WP_080130573.1 GTP 3',8-cyclase MoaA -
  BAJP3042_RS17710 (BAJP3042_17710) fdhD 3651710..3652498 (-) 789 WP_114354792.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  BAJP3042_RS17715 (BAJP3042_17715) - 3652593..3652757 (-) 165 WP_007407587.1 hypothetical protein -
  BAJP3042_RS17720 (BAJP3042_17720) - 3652843..3653523 (-) 681 WP_015240755.1 VWA domain-containing protein -
  BAJP3042_RS17725 (BAJP3042_17725) - 3653833..3654519 (-) 687 WP_007407590.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44947.11 Da        Isoelectric Point: 5.5721

>NTDB_id=527646 BAJP3042_RS17700 WP_222835441.1 3649347..3650477(-) (rapC) [Bacillus amyloliquefaciens strain JP3042]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMKLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=527646 BAJP3042_RS17700 WP_222835441.1 3649347..3650477(-) (rapC) [Bacillus amyloliquefaciens strain JP3042]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAAGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGAAGTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(192-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399