Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BAJP3042_RS08165 Genome accession   NZ_CP082243
Coordinates   1646509..1647408 (+) Length   299 a.a.
NCBI ID   WP_032871465.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1641509..1652408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS08145 (BAJP3042_08145) - 1642199..1643902 (+) 1704 WP_222835978.1 glycosyl transferase -
  BAJP3042_RS08150 (BAJP3042_08150) - 1643899..1644180 (+) 282 WP_015239847.1 FlhB-like flagellar biosynthesis protein -
  BAJP3042_RS08155 (BAJP3042_08155) sucC 1644355..1645512 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  BAJP3042_RS08160 (BAJP3042_08160) sucD 1645541..1646443 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  BAJP3042_RS08165 (BAJP3042_08165) dprA 1646509..1647408 (+) 900 WP_032871465.1 DNA-processing protein DprA Machinery gene
  BAJP3042_RS08170 (BAJP3042_08170) topA 1647590..1649665 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  BAJP3042_RS08175 (BAJP3042_08175) trmFO 1649730..1651037 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BAJP3042_RS08180 (BAJP3042_08180) xerC 1651107..1652024 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32865.01 Da        Isoelectric Point: 7.8285

>NTDB_id=527574 BAJP3042_RS08165 WP_032871465.1 1646509..1647408(+) (dprA) [Bacillus amyloliquefaciens strain JP3042]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=527574 BAJP3042_RS08165 WP_032871465.1 1646509..1647408(+) (dprA) [Bacillus amyloliquefaciens strain JP3042]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATCACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCTCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368