Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   BAJP3042_RS06910 Genome accession   NZ_CP082243
Coordinates   1353184..1355280 (-) Length   698 a.a.
NCBI ID   WP_222835914.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context

Location: 1348184..1360280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS06885 (BAJP3042_06885) - 1348774..1349034 (+) 261 WP_003154690.1 aspartyl-phosphate phosphatase Spo0E family protein -
  BAJP3042_RS06890 (BAJP3042_06890) - 1349244..1350761 (-) 1518 WP_046559543.1 ATP-binding protein -
  BAJP3042_RS06895 (BAJP3042_06895) - 1350960..1351406 (+) 447 WP_007408463.1 MarR family winged helix-turn-helix transcriptional regulator -
  BAJP3042_RS06900 (BAJP3042_06900) motB 1351442..1352227 (-) 786 WP_003154685.1 flagellar motor protein MotB -
  BAJP3042_RS06905 (BAJP3042_06905) motA 1352199..1353014 (-) 816 WP_007408461.1 flagellar motor stator protein MotA -
  BAJP3042_RS06910 (BAJP3042_06910) clpE 1353184..1355280 (-) 2097 WP_222835914.1 ATP-dependent protease ATP-binding subunit ClpE Regulator
  BAJP3042_RS06915 (BAJP3042_06915) - 1355682..1356719 (+) 1038 WP_012117417.1 membrane protein -
  BAJP3042_RS06920 (BAJP3042_06920) - 1356817..1357938 (+) 1122 WP_222835915.1 hypothetical protein -
  BAJP3042_RS06925 (BAJP3042_06925) queC 1358188..1358847 (+) 660 WP_003154679.1 7-cyano-7-deazaguanine synthase QueC -
  BAJP3042_RS06930 (BAJP3042_06930) queD 1358908..1359291 (+) 384 WP_229024199.1 6-carboxytetrahydropterin synthase QueD -
  BAJP3042_RS06935 (BAJP3042_06935) queE 1359284..1360015 (+) 732 WP_015239741.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 77751.80 Da        Isoelectric Point: 5.3604

>NTDB_id=527562 BAJP3042_RS06910 WP_222835914.1 1353184..1355280(-) (clpE) [Bacillus amyloliquefaciens strain JP3042]
MRCQHCQKNEATIRLNMQVNSIQKQFVLCETCYTELTRKPSMSMGPQSFGFPFEQGFAPNQNKQQAGPEKGLLDELAQNV
TNGAKAGLIDPVIGRDHEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVAN
TGIRGQFEERMKQLMNELKERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAALE
RRFQPVMVHEPTIEQAISILEGIKDKYEKYHGVTISNEAINACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLELDTVNE
EDAAERLKAIDAEKTKALHEENYELAAKLRDEEAALEKQLAHETPASSPEIGAEHIQAIIEQKTGIPVGKLQADEQVKMK
ELEEHLHQRVIGQEKAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDSIIRLDMSEYMEK
HAVSKIIGSPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVLIMTSNA
GTGEKQVKVGFQSEESVLEEQTLIDSLSAFFKPEFLNRFDSIIEFQSLKKEHLVKIVSLLLTELEDTLKERGISLSVTDE
AKEKIAEIGYHPAFGARPLRRTIQELIEDEMTDLLLDDNEIKAFHVVMEEDGIKVRAQ

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=527562 BAJP3042_RS06910 WP_222835914.1 1353184..1355280(-) (clpE) [Bacillus amyloliquefaciens strain JP3042]
ATGCGTTGTCAACATTGTCAGAAAAACGAGGCGACGATTCGCCTGAACATGCAAGTCAATTCCATTCAAAAACAATTCGT
TTTATGTGAAACATGTTATACAGAATTAACCCGAAAACCGTCTATGAGCATGGGGCCGCAATCATTCGGATTCCCGTTTG
AGCAAGGTTTCGCACCCAATCAAAATAAACAGCAGGCCGGCCCTGAAAAAGGCCTGCTCGACGAGCTCGCTCAAAACGTC
ACAAACGGCGCAAAAGCAGGTCTGATTGACCCTGTGATCGGCCGCGATCATGAAGTGGCGCGCGTAATTGAAATTTTGAA
CCGCCGGAATAAAAACAATCCGGTGCTGATCGGTGAACCGGGCGTCGGTAAAACGGCTATTGCAGAAGGCCTCGCGCTTA
AAATCGCTGAAGGCGATGTGCCGAACAAATTGAAAAACAAAGAGCTTTACCTGCTTGACGTCGCTTCTCTCGTCGCCAAT
ACAGGGATCAGAGGCCAGTTTGAAGAAAGAATGAAACAATTAATGAACGAATTAAAAGAACGGAAAAACGTCATCTTGTT
CATTGACGAGATTCACCTTCTTGTAGGCGCCGGCTCTGCCGAGGGATCAATGGATGCCGGGAACATCCTGAAACCGGCGC
TTGCCAGAGGCGAGCTGCAGGTCATCGGGGCGACAACGCTGAAAGAGTACCGCCAGATTGAAAAAGATGCGGCGCTTGAA
AGACGCTTCCAGCCTGTCATGGTTCACGAGCCTACAATAGAACAAGCCATCAGCATTCTGGAAGGCATTAAAGATAAATA
TGAGAAATACCACGGCGTCACAATCAGCAATGAAGCGATAAATGCCTGTGTTACGCTTTCATCCCGTTACATTCAGGACC
GCCACCTGCCGGATAAAGCGATCGACTTATTAGATGAAGCCGGCTCTAAGGCGAACCTGGAGCTTGATACCGTAAATGAA
GAAGATGCGGCTGAGAGACTCAAAGCAATTGACGCTGAGAAAACAAAAGCGCTTCATGAAGAAAATTATGAGCTTGCCGC
GAAACTGCGTGATGAAGAAGCGGCGTTGGAAAAGCAGCTGGCGCATGAAACACCGGCCTCTTCACCTGAAATCGGGGCGG
AGCATATTCAAGCCATCATTGAACAGAAAACAGGCATTCCGGTCGGAAAACTCCAGGCTGATGAACAAGTCAAAATGAAG
GAACTTGAAGAGCATCTTCATCAGCGCGTCATCGGTCAGGAAAAAGCCGTGAAAAAAGTGGCGAAAGCGGTCAGACGAAG
CCGCGCCGGCTTAAAATCCAAAAACAGACCTGTCGGCTCCTTCCTCTTTGTCGGACCGACCGGAGTCGGAAAAACCGAGT
TATCAAAGACACTCGCAGATGAACTGTTCGGTACAAAAGATTCCATTATCCGTCTCGATATGAGTGAATACATGGAAAAA
CACGCCGTATCAAAAATCATCGGTTCACCGCCGGGATATGTCGGACACGATGAAGCCGGTCAATTAACGGAAAAAGTGCG
CCGCAATCCGTACAGCATCGTGCTGCTCGATGAGATTGAAAAAGCCCACCCTGATGTCCAGCATATGTTTCTGCAGATTA
TGGAGGACGGCCGTCTGACAGACAGCCAGGGCAGAACGGTCAGCTTCAAAGATACCGTTTTGATTATGACAAGCAACGCT
GGAACCGGCGAAAAACAGGTGAAAGTCGGATTCCAATCTGAAGAGAGCGTCCTGGAAGAACAAACGCTGATTGATTCACT
GAGCGCGTTCTTCAAACCGGAGTTTTTAAACCGGTTTGACAGCATTATTGAATTCCAATCCCTGAAAAAAGAACATCTCG
TGAAAATCGTCAGCCTGCTTCTCACAGAGCTTGAAGACACATTAAAAGAGCGCGGCATCAGCCTTAGTGTAACGGACGAA
GCGAAAGAAAAAATCGCTGAAATCGGCTACCACCCAGCTTTCGGAGCACGCCCGCTCAGAAGAACCATCCAAGAATTGAT
CGAGGACGAAATGACAGATCTCTTATTGGATGACAACGAAATAAAAGCCTTCCATGTCGTAATGGAAGAGGACGGCATCA
AAGTCCGGGCACAATAA

Domains

Predicted by InterProScan.

AAA lid domain (AAA_lid_9)

(252-351)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(608-679)

ATPase family associated with various cellular activities (AAA) (AAA)

(115-246)

AAA domain (Cdc48 subfamily) (AAA_2)

(436-602)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

56.871

100

0.599
  clpC Lactococcus lactis subsp. cremoris KW2

56.676

100

0.596
  clpE Streptococcus pneumoniae Rx1

56.131

100

0.59
  clpE Streptococcus pneumoniae R6

56.131

100

0.59
  clpE Streptococcus pneumoniae D39

56.131

100

0.59
  clpE Streptococcus pneumoniae TIGR4

56.131

100

0.59
  clpC Bacillus subtilis subsp. subtilis str. 168

54.389

91.404

0.497
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.154

91.261

0.421
  clpC Streptococcus thermophilus LMD-9

44.308

93.123

0.413
  clpC Streptococcus pneumoniae TIGR4

46.042

88.682

0.408
  clpC Streptococcus pneumoniae Rx1

46.042

88.682

0.408
  clpC Streptococcus pneumoniae D39

46.042

88.682

0.408
  clpC Streptococcus thermophilus LMG 18311

43.692

93.123

0.407
  clpC Streptococcus mutans UA159

44.463

87.966

0.391