Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   BAJP3042_RS05815 Genome accession   NZ_CP082243
Coordinates   1158941..1160101 (+) Length   386 a.a.
NCBI ID   WP_222835848.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context

Location: 1153941..1165101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS05785 (BAJP3042_05785) - 1154688..1155875 (+) 1188 WP_222835847.1 putative glycoside hydrolase -
  BAJP3042_RS05790 (BAJP3042_05790) - 1155993..1156571 (+) 579 WP_007409110.1 GNAT family N-acetyltransferase -
  BAJP3042_RS05795 (BAJP3042_05795) spx 1156750..1157145 (+) 396 WP_003155034.1 transcriptional regulator Spx -
  BAJP3042_RS05800 (BAJP3042_05800) - 1157202..1157858 (-) 657 WP_007409109.1 TerC family protein -
  BAJP3042_RS05805 (BAJP3042_05805) - 1158041..1158151 (+) 111 Protein_1088 adaptor protein MecA -
  BAJP3042_RS05810 (BAJP3042_05810) mecA 1158134..1158790 (+) 657 WP_003155032.1 adaptor protein MecA Regulator
  BAJP3042_RS05815 (BAJP3042_05815) coiA 1158941..1160101 (+) 1161 WP_222835848.1 competence protein CoiA family protein Machinery gene
  BAJP3042_RS05820 (BAJP3042_05820) pepF 1160329..1162158 (+) 1830 WP_007409107.1 oligoendopeptidase F Regulator
  BAJP3042_RS05825 (BAJP3042_05825) - 1162196..1162363 (-) 168 WP_003155026.1 hypothetical protein -
  BAJP3042_RS05830 (BAJP3042_05830) spxH 1162649..1163551 (-) 903 WP_039251990.1 protease adaptor protein SpxH -
  BAJP3042_RS05835 (BAJP3042_05835) - 1163548..1163946 (-) 399 WP_003155023.1 thiol management oxidoreductase -
  BAJP3042_RS05840 (BAJP3042_05840) - 1164175..1164861 (-) 687 WP_007409105.1 lytic transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 44470.31 Da        Isoelectric Point: 10.0746

>NTDB_id=527557 BAJP3042_RS05815 WP_222835848.1 1158941..1160101(+) (coiA) [Bacillus amyloliquefaciens strain JP3042]
MFSAVTADGRFIQLAGSYSKEKAAELRKKRWFCPVCKSELDIKLGREKLPHFAHKKSRLCPGESEPESEYHLEGKRQLFL
WLKTQGCSVSLEPYLTSAGQRPDLTAESGEERLAFEFQCANLSADSLKSRTAGLKNAGYRPVWIIGAKRLKRMAAQFFRL
SAFHWQFFEVHSFSSLLFYCPDARSFYRLHSITPFYTGYSYAGLTTIPLHKANLKDICHPEGRYSVRLPSWGRAVAGFRN
KSGRFLSEDAGLIRRLFYERHQVAFPFLPSEVFIPVSAGFVFASPVFVWQGHLYLRLAELSKKGAPIRLSGMVHDLRQKI
RRKEIRMRYGSQDSLIGMAVKQYADFLCLQDFLREIENEVYMPSSQRKLPQTAEELRRRDLLFFGE

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=527557 BAJP3042_RS05815 WP_222835848.1 1158941..1160101(+) (coiA) [Bacillus amyloliquefaciens strain JP3042]
ATGTTCAGTGCTGTGACTGCCGACGGACGGTTCATTCAGCTGGCCGGAAGCTATTCAAAGGAAAAAGCGGCGGAGCTGAG
AAAGAAACGCTGGTTCTGCCCCGTTTGCAAAAGTGAGCTTGATATCAAACTGGGACGGGAGAAACTGCCGCACTTCGCTC
ATAAAAAAAGCAGGCTGTGTCCAGGGGAATCCGAACCTGAAAGCGAATACCATCTGGAAGGAAAAAGGCAGCTTTTTCTC
TGGCTAAAGACACAAGGGTGCAGCGTCAGCCTGGAACCGTATCTGACTTCCGCTGGACAGCGGCCTGACTTGACGGCGGA
AAGCGGAGAAGAGAGGCTGGCTTTTGAATTTCAATGTGCGAACCTTTCGGCGGACTCTTTAAAGAGCCGGACGGCAGGCC
TGAAAAACGCCGGGTACCGGCCGGTCTGGATCATCGGGGCAAAACGGTTAAAACGGATGGCCGCGCAATTTTTCCGGCTT
TCTGCTTTTCACTGGCAGTTCTTTGAAGTCCATTCATTTTCCTCCTTACTGTTTTACTGCCCCGACGCCCGCTCCTTTTA
CAGGCTGCATTCCATCACTCCGTTTTACACCGGCTATTCTTATGCCGGCTTAACCACAATCCCTCTTCACAAAGCAAACC
TGAAAGACATTTGTCATCCGGAAGGGCGGTACAGCGTCAGACTTCCCTCGTGGGGACGTGCCGTAGCCGGCTTCCGCAAC
AAAAGCGGGCGGTTTTTATCTGAAGATGCCGGTCTTATCCGGCGTCTTTTTTACGAAAGACATCAGGTCGCATTTCCATT
TCTCCCCTCTGAAGTGTTTATTCCCGTTTCAGCGGGCTTTGTGTTTGCAAGTCCCGTTTTTGTGTGGCAGGGCCATTTAT
ACTTGCGGCTTGCGGAACTTTCTAAAAAAGGCGCGCCGATCCGATTATCCGGCATGGTTCATGATTTGCGGCAAAAAATC
AGGCGTAAGGAGATTCGGATGCGGTATGGTTCACAAGATAGCCTTATCGGAATGGCGGTAAAACAATATGCTGATTTCTT
ATGCTTGCAGGATTTTTTAAGGGAAATTGAGAATGAAGTATATATGCCCTCATCTCAACGGAAGCTCCCTCAAACGGCAG
AAGAGCTGCGCCGGCGGGATCTGCTCTTTTTTGGGGAATGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

46.721

94.819

0.443