Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BAJP3042_RS03985 Genome accession   NZ_CP082243
Coordinates   811466..812182 (+) Length   238 a.a.
NCBI ID   WP_053573584.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 806466..817182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS03955 (BAJP3042_03955) - 806646..807023 (+) 378 WP_007610033.1 DUF1992 domain-containing protein -
  BAJP3042_RS03960 (BAJP3042_03960) - 807033..807464 (-) 432 WP_144664932.1 Hsp20/alpha crystallin family protein -
  BAJP3042_RS03965 (BAJP3042_03965) - 807480..807722 (-) 243 WP_003155595.1 spore germination protein -
  BAJP3042_RS03970 (BAJP3042_03970) - 807737..807997 (-) 261 WP_014417185.1 spore germination protein -
  BAJP3042_RS03975 (BAJP3042_03975) treP 808268..809683 (+) 1416 WP_060562229.1 PTS system trehalose-specific EIIBC component -
  BAJP3042_RS03980 (BAJP3042_03980) treC 809759..811444 (+) 1686 WP_222835755.1 alpha,alpha-phosphotrehalase -
  BAJP3042_RS03985 (BAJP3042_03985) treR 811466..812182 (+) 717 WP_053573584.1 trehalose operon repressor Regulator
  BAJP3042_RS03990 (BAJP3042_03990) - 812315..812980 (+) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  BAJP3042_RS03995 (BAJP3042_03995) - 813016..813777 (-) 762 WP_222835756.1 YibE/F family protein -
  BAJP3042_RS04000 (BAJP3042_04000) - 813774..814913 (-) 1140 WP_007408501.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27461.46 Da        Isoelectric Point: 7.3204

>NTDB_id=527535 BAJP3042_RS03985 WP_053573584.1 811466..812182(+) (treR) [Bacillus amyloliquefaciens strain JP3042]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEQIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLDDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=527535 BAJP3042_RS03985 WP_053573584.1 811466..812182(+) (treR) [Bacillus amyloliquefaciens strain JP3042]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACAAATTATTTTGGACAAGGATTACTTTGTAAAAAAACATGTGCCTCTATTGACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGACGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424