Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   K6973_RS08730 Genome accession   NZ_CP082206
Coordinates   1734742..1735350 (+) Length   202 a.a.
NCBI ID   WP_003060942.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1729742..1740350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS08700 (K6973_08700) - 1730008..1730490 (+) 483 WP_138126252.1 S-ribosylhomocysteine lyase -
  K6973_RS08705 (K6973_08705) - 1730604..1732085 (-) 1482 WP_218654749.1 cell division site-positioning protein MapZ family protein -
  K6973_RS08710 (K6973_08710) - 1732099..1733253 (-) 1155 WP_218654750.1 class I SAM-dependent RNA methyltransferase -
  K6973_RS08720 (K6973_08720) gpsB 1733698..1734024 (-) 327 WP_003052194.1 cell division regulator GpsB -
  K6973_RS08725 (K6973_08725) - 1734146..1734661 (-) 516 WP_138126258.1 DUF1273 domain-containing protein -
  K6973_RS08730 (K6973_08730) recU 1734742..1735350 (+) 609 WP_003060942.1 Holliday junction resolvase RecU Machinery gene
  K6973_RS08735 (K6973_08735) pbp1a 1735337..1737502 (+) 2166 WP_222819252.1 penicillin-binding protein PBP1A -
  K6973_RS08740 (K6973_08740) pepC 1737550..1738881 (-) 1332 WP_129556137.1 aminopeptidase C -
  K6973_RS08745 (K6973_08745) nadE 1739061..1739885 (-) 825 WP_003055492.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23336.95 Da        Isoelectric Point: 9.9487

>NTDB_id=527482 K6973_RS08730 WP_003060942.1 1734742..1735350(+) (recU) [Streptococcus dysgalactiae strain DY107]
MVNYPHNLIRQKAPSVPKQSKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPIQIVKVDYPKRSRAKIIEAYF
RQASTTDYSGVYKGHYIDFEAKETRQKTAMPMKNFHLHQIEHMAAVVEQNGICFVLLHFSTLKETYYLPARALIAFYQID
KGNKSMPLDYIRKHGFKIVIGAFPQVPYLDIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=527482 K6973_RS08730 WP_003060942.1 1734742..1735350(+) (recU) [Streptococcus dysgalactiae strain DY107]
ATGGTCAACTACCCTCATAATCTTATTCGACAAAAAGCACCTTCCGTGCCAAAGCAATCAAAACAAAATAAGGTAGATTT
TGCCAATCGAGGCATGTCTTTTGAAGCAGCCATCAACGCGACAAATGATTATTATTTGTCGCGGCAAATTGCTGTTATTC
ATAAAAAACCTACCCCCATCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGTGCGAAAATCATTGAAGCGTACTTT
AGACAAGCTTCAACGACAGATTATTCTGGGGTTTACAAGGGGCACTATATTGATTTTGAGGCCAAGGAAACCAGGCAAAA
AACAGCCATGCCTATGAAAAATTTTCATCTCCATCAGATTGAGCACATGGCAGCTGTTGTGGAACAAAATGGAATTTGCT
TTGTCTTACTTCACTTCTCAACACTGAAAGAAACCTACTATCTGCCTGCTCGGGCTCTTATTGCTTTTTATCAGATTGAT
AAGGGGAACAAATCAATGCCCCTCGATTATATCAGAAAACATGGCTTTAAGATAGTTATTGGAGCCTTTCCACAAGTCCC
TTATCTAGACATAATAGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5