Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K6973_RS07905 Genome accession   NZ_CP082206
Coordinates   1563189..1564850 (-) Length   553 a.a.
NCBI ID   WP_138126059.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1558189..1569850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS07880 (K6973_07880) - 1559232..1559507 (-) 276 WP_003044261.1 HU family DNA-binding protein -
  K6973_RS07885 (K6973_07885) - 1559606..1560193 (-) 588 WP_222819213.1 YpmS family protein -
  K6973_RS07890 (K6973_07890) - 1560171..1561013 (-) 843 WP_222819214.1 SGNH/GDSL hydrolase family protein -
  K6973_RS07895 (K6973_07895) - 1561006..1561845 (-) 840 WP_343237783.1 DegV family protein -
  K6973_RS07900 (K6973_07900) - 1562098..1562982 (-) 885 WP_222819216.1 LPXTG cell wall anchor domain-containing protein -
  K6973_RS07905 (K6973_07905) recN 1563189..1564850 (-) 1662 WP_138126059.1 DNA repair protein RecN Machinery gene
  K6973_RS07910 (K6973_07910) - 1564869..1565339 (-) 471 WP_111717058.1 arginine repressor -
  K6973_RS07915 (K6973_07915) - 1565326..1566153 (-) 828 WP_129555428.1 TlyA family RNA methyltransferase -
  K6973_RS07920 (K6973_07920) - 1566146..1567018 (-) 873 WP_138126061.1 polyprenyl synthetase family protein -
  K6973_RS07925 (K6973_07925) - 1567018..1567233 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  K6973_RS07930 (K6973_07930) xseA 1567211..1568551 (-) 1341 WP_129555426.1 exodeoxyribonuclease VII large subunit -
  K6973_RS07935 (K6973_07935) - 1568702..1569550 (-) 849 WP_222819217.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62153.30 Da        Isoelectric Point: 4.5991

>NTDB_id=527474 K6973_RS07905 WP_138126059.1 1563189..1564850(-) (recN) [Streptococcus dysgalactiae strain DY107]
MLLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRHGANKAEIEGFFSVDANPALVACL
EASGIAMEEDLVIRRDIFANGRSVSRINGQMVNLATLKEVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKTFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIETAALNRGEDERLGQERDRLLNHKKIADTLTNAYVMLDNED
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGDV
NDVLDYYDNIVKEYQLLTGDELSSGDLEAELKSLEKQLVAAASELSVSRHQLAEQLETDIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISKKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTSEERVEEIARMLAGADMTEAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=527474 K6973_RS07905 WP_138126059.1 1563189..1564850(-) (recN) [Streptococcus dysgalactiae strain DY107]
ATGCTATTAGAAATTTCCATTAAAAATTTTGCCATTATTGAGGAAATCTCTCTGAATTTTGAAAATGGCATGACAGTTTT
GACGGGTGAAACAGGAGCTGGAAAGTCCATTATTATTGATGCCATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGCCACGGCGCTAATAAGGCAGAAATTGAAGGCTTTTTTTCCGTAGATGCCAATCCGGCACTAGTTGCATGTTTA
GAAGCCTCTGGAATTGCAATGGAAGAAGATTTGGTAATCCGCCGAGATATTTTTGCCAATGGCAGAAGCGTGAGCCGTAT
TAACGGTCAGATGGTTAACTTAGCGACCTTAAAAGAGGTCGGGCAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGAGACCACAGCTCCATCAGCAAATTTTGGATGCTTTTGGTGATAAGACTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGACAGGTTATTGATAAACAAAAAAATGAAAAAGAACATAAAGA
TCGTATCGACATGTTGGCTTTTCAGATAGCGGAGATTGAAACTGCAGCTTTGAATCGAGGAGAAGATGAGCGACTAGGTC
AAGAACGTGATCGTTTGTTAAATCATAAGAAAATTGCTGATACCCTGACCAATGCTTATGTCATGCTAGATAATGAAGAT
TTTTCAAGCCTATCCAATATTCGCTCTAGCATGAATGACTTGCTATCAATTGAGCAGTTTGATTCTGAGTACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGCGATGTG
AATGATGTGCTTGACTACTACGATAATATCGTCAAAGAATATCAGCTATTAACAGGCGATGAGTTGTCTTCAGGGGACCT
AGAGGCAGAATTGAAAAGCTTAGAAAAACAATTGGTTGCTGCTGCTTCGGAGTTAAGTGTCTCTCGCCATCAATTGGCGG
AGCAATTAGAAACTGATATCAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGACTTCAAAGTTCACTTTACCACA
TCGAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCCACCAATCCAGGTGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCGGGCGGCGAATTATCACGCTTGATGTTGGCCATCAAGGCAGCTATCTCTAAAAAAGAAGATAAAACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGAGTTGCTCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTCATTGCCATCGCTGATTACCAGTATTTTATTTCTAAAGA
GAGTAAAGAAGAGTCCACTGTTTCGAAGGTAAGGTTGTTAACTTCTGAAGAACGTGTGGAAGAAATTGCCAGAATGCTTG
CTGGTGCAGACATGACAGAAGCTGCTCTCACTCAGGCTCGTGAATTACTGGCCAAACATTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.268

100

0.454