Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   K6973_RS04370 Genome accession   NZ_CP082206
Coordinates   844486..848115 (+) Length   1209 a.a.
NCBI ID   WP_281429772.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 839486..853115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS04360 (K6973_04360) - 840161..841087 (-) 927 WP_022554458.1 neutral zinc metallopeptidase -
  K6973_RS04365 (K6973_04365) rexB 841262..844486 (+) 3225 WP_218655261.1 ATP-dependent nuclease subunit B Machinery gene
  K6973_RS04370 (K6973_04370) rexA 844486..848115 (+) 3630 WP_281429772.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  K6973_RS04375 (K6973_04375) - 848017..849570 (-) 1554 WP_261987966.1 IS1182 family transposase -
  K6973_RS04380 (K6973_04380) - 849793..850926 (+) 1134 WP_222819609.1 aminotransferase -
  K6973_RS04385 (K6973_04385) - 850976..851788 (+) 813 WP_218655264.1 transporter substrate-binding domain-containing protein -
  K6973_RS04390 (K6973_04390) rpsU 851878..852054 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  K6973_RS04395 (K6973_04395) mscL 852186..852560 (-) 375 WP_218655265.1 large conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 1209 a.a.        Molecular weight: 138266.76 Da        Isoelectric Point: 5.3423

>NTDB_id=527447 K6973_RS04370 WP_281429772.1 844486..848115(+) (rexA) [Streptococcus dysgalactiae strain DY107]
MSFDPFLSPSAIAQLQEKEAQSSQAQKRTPEQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSVDRLFISTFT
VKAATELRERIEKKLYAEIAKTSDPLLKAYLTDQLQALSQADIGTMDAFAQKVLIRYGYSIGISPQFRIMQDKAEQDILK
RDVFSKLFEEFMTQDDPSLFKALVKNFSGNRKDASSFREVVYSCYAFSQSTENPKQWLEETFLKAAQTYQGLEDVPEQEI
QLLLSTMQDTADQLRDVTDMEDYGQLTKAGKPTAKYVKHLAMIEKLYEWARDFPHLYGRQGISRLAKDLTALLPTGNDAT
VAGIKYPVFKSLHQKLIRFRHLETILSYQPESLPLLELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPDIR
QTYQDQYHEVMVDEYQDNNHMQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDYQTYPEQGKLILLKENFR
SQSEVLEASNTVFTHLMDESLGNILYDEQHQLVAGSVGQKIASPEHRAKLLLYNTDHEDQLDIEDADGISPSEVTIVAKE
IIRLHNEQHVPFEDITLLVSSRTRNDAIFHTFNQYGIPLVADGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSP
MFAFDEDELTRLALQQGDDKEADCLYDKLERACLGTGTHPDLVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFND
RFYFDFVGSQAKAEQAQANLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVASPKQAVNLMTIHKSKGLEF
KYVFLLNCDKHFAMTDVHAPFILSRQQGIGIKYLADVKDVLEEKTLPAVKVSMETLPYQLNKQELRLATLSEQMRLLYVA
MTRAEKQIYLIGKASKEKSQEFTDGKRLGNHLPLALRERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQ
TQQLLQPDDLKDNRQSADITRAIDMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDSDGVEVMEKSYRTLNEFTLP
EFSKQVKVEASQVGSALHRLMQAIPLTKPISLATIAQAVEEIEAEAVVKAALDLQKVEQFFTETALGKRFQTYSTNLYRE
APFAILKKDPLSQEDYVIRGIIDAFLLFEDHIELIDYKTDRYRHPSDLKTRYQQQLELYAEALSQTYGLPVTKKYLVLMG
GPELAIVTL

Nucleotide


Download         Length: 3630 bp        

>NTDB_id=527447 K6973_RS04370 WP_281429772.1 844486..848115(+) (rexA) [Streptococcus dysgalactiae strain DY107]
ATATCATTTGACCCTTTTTTAAGTCCAAGTGCCATTGCGCAACTACAAGAAAAAGAAGCTCAAAGTAGTCAAGCGCAAAA
AAGAACCCCAGAACAAATCGAAGCTATTTATACCAGTGGGCAAAATATCTTGGTGTCAGCCTCAGCTGGATCTGGAAAAA
CCTTTGTTATGGTGGAACGGATTCTTGATAAAATCCTAAGGGGTGTTTCAGTAGATAGACTTTTTATTTCAACCTTTACG
GTCAAAGCCGCTACCGAGTTACGTGAACGTATTGAAAAAAAACTGTATGCGGAAATTGCGAAAACCAGTGATCCTTTGCT
AAAAGCTTATCTAACAGACCAATTACAAGCTTTGTCACAGGCTGATATTGGGACGATGGATGCTTTTGCTCAAAAAGTCC
TCATCCGTTACGGGTACAGCATTGGTATTTCCCCACAATTTCGTATTATGCAAGATAAGGCGGAGCAAGACATTCTAAAG
CGAGATGTTTTTAGCAAATTATTTGAAGAATTTATGACTCAAGATGATCCGTCCTTGTTCAAGGCATTGGTCAAAAATTT
TTCCGGTAATCGTAAAGATGCTTCTTCGTTTAGAGAAGTCGTCTATAGTTGCTACGCCTTTAGCCAATCTACTGAAAATC
CGAAACAGTGGTTAGAAGAAACCTTTCTAAAAGCTGCTCAAACCTATCAAGGGCTTGAAGATGTCCCTGAACAAGAGATT
CAACTCTTACTGTCGACCATGCAAGATACCGCAGATCAGTTAAGAGATGTGACTGACATGGAAGATTATGGTCAGCTGAC
AAAAGCTGGAAAACCAACAGCAAAATACGTCAAACATTTGGCCATGATAGAGAAGCTTTACGAATGGGCGCGTGACTTTC
CTCACCTCTATGGGAGACAGGGGATAAGCCGCCTAGCAAAGGACCTAACAGCCCTTTTGCCGACTGGAAATGATGCGACA
GTGGCTGGGATAAAATACCCTGTCTTCAAGAGTTTACACCAAAAGCTCATCCGATTTAGGCACTTAGAAACCATTTTAAG
CTATCAGCCAGAAAGCCTTCCCTTATTAGAACTTTTGAAGATTGTTGTGCTTGCTTTTTCGAAGGCTTATTTGGATGCCA
AAAAACAAGAAGGTGCTTTTGAATTTTCAGATATTGCCCATTTTGCCATACAGATTTTAGAAGAAAACCCTGATATTAGG
CAGACATATCAAGACCAGTATCATGAAGTCATGGTTGATGAGTATCAAGATAATAATCATATGCAAGAGCGGCTGTTGAC
CTTATTATCAAATGGACATAACCGTTTTATGGTGGGTGATATTAAACAATCCATTTACCGTTTTCGACAGGCAGATCCTC
AGATCTTCAATCAAAAATTCAAGGACTATCAAACCTATCCTGAGCAAGGAAAACTCATTTTATTGAAAGAGAATTTCCGG
AGTCAATCAGAAGTTTTAGAAGCTAGCAATACTGTCTTTACTCATTTAATGGATGAATCCCTAGGAAATATTTTGTATGA
TGAGCAGCATCAGTTGGTGGCAGGTAGCGTTGGTCAAAAAATTGCTTCCCCAGAGCATCGTGCTAAGCTCCTGCTTTATA
ACACCGATCACGAAGATCAACTTGACATAGAAGATGCAGATGGCATTTCGCCTAGTGAAGTGACCATCGTTGCCAAAGAA
ATCATTAGGTTACACAATGAGCAACACGTACCTTTTGAGGATATAACCCTCTTAGTATCATCCAGAACAAGAAATGATGC
CATTTTTCATACCTTTAACCAATACGGTATTCCGCTTGTGGCAGATGGTGGTCAGCAAAATTACCTTAAGTCAGTTGAAG
TAATGGTGATGTTGGATACCTTACGTACTATTAATAACCCAAGAAATGATTATGCCTTGGTCGCTCTATTGCGTTCACCG
ATGTTTGCTTTTGATGAAGATGAACTGACTAGGCTAGCCCTCCAACAAGGAGACGACAAAGAAGCAGATTGCCTCTATGA
TAAATTGGAGAGAGCATGCCTTGGCACAGGAACACACCCTGATTTGGTCCATCAAGACCTAAAACTAAAACTAAGCAGGT
TTATAGAGACCTTAAAAAGCTGGCGCCGTTACGCTAAAATCAGGTCGCTCTATGATCTCATTTGGAAAATTTTCAATGAC
CGTTTCTATTTTGACTTTGTGGGTAGTCAAGCTAAAGCAGAACAGGCACAAGCTAATTTATATGCCTTAGCTCTTCGAGC
TAATCAGTTTGAACAATCAGGTTACAAAGGTCTCTCGCGTTTTATTGGCATGATTGACAAGGTGCTGGAAACACAAAACG
ATTTAGCCGATGTTGAGGTAGCTAGCCCAAAACAAGCGGTTAATCTGATGACTATTCACAAGTCCAAGGGATTGGAATTC
AAGTATGTCTTTCTCCTCAACTGTGATAAACATTTTGCCATGACAGATGTCCATGCACCATTTATTTTAAGCCGTCAACA
GGGCATCGGTATTAAGTATCTAGCAGATGTCAAAGACGTTCTGGAAGAAAAGACGTTACCTGCGGTCAAAGTGAGTATGG
AAACTCTCCCCTATCAACTCAATAAACAAGAGCTGCGTTTGGCAACTCTGTCTGAGCAAATGCGCTTACTCTATGTTGCT
ATGACACGGGCTGAAAAGCAAATCTATCTGATAGGCAAGGCAAGCAAGGAGAAAAGTCAAGAATTTACCGATGGCAAACG
CTTGGGAAATCATTTGCCTTTAGCTCTACGTGAGCGACTAATGTCCTTCCAAGATTGGCTTTTAGCGATAGCAGATACCT
TCACTGCAGAAGATCTTCATTTTGATGTTCAGTTTATTGAAGAAAGTGAATTGAGTCCAGAAGCTATTGGTCATCTACAG
ACTCAACAGCTCTTACAACCAGATGACCTCAAAGACAATCGTCAGTCAGCAGATATTACGAGAGCCATTGACATGCTTAA
TAAGGTATCTCAACTTAATGAACGCTATGAAGCTGCCATTCACCTACCAACAGTCCGAACGCCAAGCCAACTAAAAGCTG
CTTATGAGCCCCTGTTGGATTCAGATGGCGTCGAGGTTATGGAAAAAAGTTATCGGACACTCAATGAATTTACCTTACCC
GAATTTTCAAAGCAAGTTAAAGTTGAAGCTAGTCAGGTAGGGTCAGCCCTTCATCGACTCATGCAAGCCATCCCTTTAAC
GAAGCCAATCAGTTTGGCAACAATTGCGCAAGCGGTGGAAGAAATAGAAGCTGAAGCAGTGGTCAAAGCAGCCCTTGATT
TACAAAAGGTAGAACAGTTCTTTACTGAAACGGCTTTAGGAAAAAGGTTTCAAACCTACTCGACTAACCTTTACCGAGAA
GCTCCATTTGCCATCCTCAAGAAAGACCCTCTCAGCCAAGAAGATTATGTCATTCGTGGGATTATAGATGCCTTTCTCTT
GTTTGAAGATCATATCGAATTGATAGACTACAAAACAGATAGGTATCGTCATCCGAGTGACTTAAAAACACGCTATCAAC
AACAATTGGAATTATATGCAGAAGCGCTTAGCCAGACCTATGGACTTCCTGTAACCAAAAAGTACTTGGTGCTGATGGGC
GGACCAGAGTTGGCTATTGTGACGCTTTGA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1039-1188)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-891)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.438

71.878

0.37