Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I6I41_RS26530 Genome accession   NZ_CP068135
Coordinates   5311884..5312630 (+) Length   248 a.a.
NCBI ID   WP_000487009.1    Uniprot ID   -
Organism   Bacillus cereus strain FDAARGOS_1084     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 5306884..5317630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I41_RS26500 (I6I41_26500) - 5307173..5309317 (+) 2145 WP_000091509.1 HD family phosphohydrolase -
  I6I41_RS26505 (I6I41_26505) ybeY 5309314..5309784 (+) 471 WP_000054684.1 rRNA maturation RNase YbeY -
  I6I41_RS26510 (I6I41_26510) - 5309781..5310134 (+) 354 WP_000715466.1 diacylglycerol kinase family protein -
  I6I41_RS26515 (I6I41_26515) - 5310234..5310632 (+) 399 WP_001086285.1 cytidine deaminase -
  I6I41_RS26520 (I6I41_26520) era 5310625..5311530 (+) 906 WP_001080230.1 GTPase Era -
  I6I41_RS26525 (I6I41_26525) - 5311707..5311850 (+) 144 WP_000883924.1 YqzL family protein -
  I6I41_RS26530 (I6I41_26530) recO 5311884..5312630 (+) 747 WP_000487009.1 DNA repair protein RecO Machinery gene
  I6I41_RS26535 (I6I41_26535) - 5312738..5313370 (+) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  I6I41_RS26540 (I6I41_26540) - 5313400..5314212 (+) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  I6I41_RS26545 (I6I41_26545) - 5314848..5314991 (+) 144 WP_000479733.1 hypothetical protein -
  I6I41_RS26550 (I6I41_26550) dnaG 5315073..5316869 (+) 1797 WP_074618773.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28618.21 Da        Isoelectric Point: 8.0566

>NTDB_id=527423 I6I41_RS26530 WP_000487009.1 5311884..5312630(+) (recO) [Bacillus cereus strain FDAARGOS_1084]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=527423 I6I41_RS26530 WP_000487009.1 5311884..5312630(+) (recO) [Bacillus cereus strain FDAARGOS_1084]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTAATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTTAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552