Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   I6I41_RS20775 Genome accession   NZ_CP068135
Coordinates   4181436..4182563 (-) Length   375 a.a.
NCBI ID   WP_063535452.1    Uniprot ID   -
Organism   Bacillus cereus strain FDAARGOS_1084     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4176436..4187563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I41_RS20765 (I6I41_20765) gyrA 4176915..4179386 (-) 2472 WP_025710392.1 DNA gyrase subunit A -
  I6I41_RS20770 (I6I41_20770) gyrB 4179475..4181397 (-) 1923 WP_000435982.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  I6I41_RS20775 (I6I41_20775) recF 4181436..4182563 (-) 1128 WP_063535452.1 DNA replication/repair protein RecF Machinery gene
  I6I41_RS20780 (I6I41_20780) yaaA 4182576..4182788 (-) 213 WP_000821364.1 S4 domain-containing protein YaaA -
  I6I41_RS20785 (I6I41_20785) dnaN 4182916..4184061 (-) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  I6I41_RS20790 (I6I41_20790) dnaA 4184240..4185580 (-) 1341 WP_000428017.1 chromosomal replication initiator protein DnaA -
  I6I41_RS20795 (I6I41_20795) rpmH 4186145..4186279 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  I6I41_RS20800 (I6I41_20800) rnpA 4186356..4186703 (+) 348 WP_074619005.1 ribonuclease P protein component -
  I6I41_RS20805 (I6I41_20805) spoIIIJ 4186756..4187532 (+) 777 WP_025710390.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43376.70 Da        Isoelectric Point: 6.6001

>NTDB_id=527407 I6I41_RS20775 WP_063535452.1 4181436..4182563(-) (recF) [Bacillus cereus strain FDAARGOS_1084]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=527407 I6I41_RS20775 WP_063535452.1 4181436..4182563(-) (recF) [Bacillus cereus strain FDAARGOS_1084]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCGCAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTATATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651