Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I6I41_RS20575 Genome accession   NZ_CP068135
Coordinates   4144967..4145251 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain FDAARGOS_1084     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4139967..4150251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I41_RS20560 (I6I41_20560) rnmV 4140793..4141350 (-) 558 WP_000692836.1 ribonuclease M5 -
  I6I41_RS20565 (I6I41_20565) - 4141565..4142332 (-) 768 WP_000895851.1 TatD family hydrolase -
  I6I41_RS20570 (I6I41_20570) metG 4142499..4144481 (-) 1983 WP_000134132.1 methionine--tRNA ligase -
  I6I41_RS20575 (I6I41_20575) abrB 4144967..4145251 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  I6I41_RS20580 (I6I41_20580) rsmI 4145272..4146147 (-) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  I6I41_RS20585 (I6I41_20585) - 4146116..4146406 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  I6I41_RS20590 (I6I41_20590) - 4146393..4147133 (-) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  I6I41_RS20595 (I6I41_20595) yabA 4147216..4147566 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  I6I41_RS20600 (I6I41_20600) - 4147581..4148408 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  I6I41_RS20605 (I6I41_20605) holB 4148414..4149397 (-) 984 WP_000169561.1 DNA polymerase III subunit delta' -
  I6I41_RS20610 (I6I41_20610) tmk 4149433..4150059 (-) 627 WP_000677218.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=527405 I6I41_RS20575 WP_000843036.1 4144967..4145251(+) (abrB) [Bacillus cereus strain FDAARGOS_1084]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=527405 I6I41_RS20575 WP_000843036.1 4144967..4145251(+) (abrB) [Bacillus cereus strain FDAARGOS_1084]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851