Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   K6973_RS00305 Genome accession   NZ_CP082206
Coordinates   41846..42610 (+) Length   254 a.a.
NCBI ID   WP_218654976.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36846..47610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS00295 (K6973_00295) - 39303..40505 (+) 1203 WP_222819417.1 CHAP domain-containing protein -
  K6973_RS00300 (K6973_00300) - 40659..41621 (+) 963 WP_218654975.1 ribose-phosphate diphosphokinase -
  K6973_RS00305 (K6973_00305) recO 41846..42610 (+) 765 WP_218654976.1 DNA repair protein RecO Machinery gene
  K6973_RS00310 (K6973_00310) plsX 42717..43724 (+) 1008 WP_222819418.1 phosphate acyltransferase PlsX -
  K6973_RS00315 (K6973_00315) - 43717..43959 (+) 243 WP_003049042.1 phosphopantetheine-binding protein -
  K6973_RS00320 (K6973_00320) purC 44124..44834 (+) 711 WP_218654978.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29987.20 Da        Isoelectric Point: 5.7481

>NTDB_id=527404 K6973_RS00305 WP_218654976.1 41846..42610(+) (recO) [Streptococcus dysgalactiae strain DY107]
MQLNESLGIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLSSVIQPLTAADFIFKLNESGLSYIDDYNHVDTYQQ
INKDLFQLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEVLTNIFEIQVLERFGIRINFHDCVFCHRVGL
PFDFSHHYSGVLCPEHYHKDDYRNHLDPNVIYLLDRFQTIQFDELRTISLNDEMKRKLRYFIDELYHDYVGIKLKSKTFI
DDLAKWGDIMKPKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=527404 K6973_RS00305 WP_218654976.1 41846..42610(+) (recO) [Streptococcus dysgalactiae strain DY107]
ATGCAGTTAAACGAGTCATTGGGAATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTGGTCAAGATATTCAC
AGAGACAGCAGGCAAACGCATGTTTTTCGTGAAACATATTAGTCGTTCTAAACTTTCTTCCGTCATTCAACCTTTAACGG
CTGCTGACTTTATATTTAAGTTGAACGAATCAGGTCTTTCTTATATTGACGATTACAATCATGTGGATACTTATCAACAG
ATTAATAAGGACCTTTTTCAACTTTCCTATGCGAGTTATGTAGTGGCTTTGGCAGATGCCGCTATTTCAGATAATGAGCC
AGATCCTCACCTCTTTGCCTTTCTGAAAAAGACACTTGATTTAATGGAAGAGGGGTTGGATTACGAGGTTTTGACCAACA
TTTTTGAAATCCAAGTTTTAGAGCGTTTTGGGATTAGAATAAACTTTCATGACTGTGTTTTTTGTCATCGTGTCGGTTTA
CCATTTGATTTTTCACATCACTATTCGGGTGTGCTTTGCCCTGAACATTATCATAAAGATGACTACCGGAATCATCTAGA
TCCTAATGTCATCTATTTACTAGACCGTTTTCAAACCATTCAGTTTGATGAATTGAGAACCATTTCCTTAAATGATGAGA
TGAAAAGAAAACTTCGTTATTTCATTGATGAGTTATATCATGACTATGTAGGAATCAAGTTAAAAAGTAAAACGTTTATT
GATGATTTAGCTAAATGGGGCGATATTATGAAACCAAAGGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.821

96.85

0.618