Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   I6I41_RS14400 Genome accession   NZ_CP068135
Coordinates   2882754..2883077 (+) Length   107 a.a.
NCBI ID   WP_000578884.1    Uniprot ID   A0A9W5R9C5
Organism   Bacillus cereus strain FDAARGOS_1084     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2877754..2888077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I41_RS14385 (I6I41_14385) - 2878268..2879635 (-) 1368 WP_000028370.1 aldehyde dehydrogenase -
  I6I41_RS14390 (I6I41_14390) inhA1 2879807..2882197 (-) 2391 WP_074618914.1 M6 family metalloprotease immune inhibitor InhA1 -
  I6I41_RS14395 (I6I41_14395) - 2882540..2882674 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  I6I41_RS14400 (I6I41_14400) sinR 2882754..2883077 (+) 324 WP_000578884.1 helix-turn-helix domain-containing protein Regulator
  I6I41_RS14405 (I6I41_14405) calY 2883144..2883737 (-) 594 WP_000053714.1 biofilm matrix protein CalY -
  I6I41_RS14410 (I6I41_14410) - 2884115..2884966 (-) 852 WP_139304496.1 DUF4047 domain-containing protein -
  I6I41_RS14415 (I6I41_14415) - 2885101..2885688 (-) 588 WP_000172852.1 CalY family protein -
  I6I41_RS14420 (I6I41_14420) sipW 2885749..2886318 (-) 570 WP_000767792.1 signal peptidase I SipW -
  I6I41_RS14425 (I6I41_14425) - 2886509..2887795 (-) 1287 WP_071732549.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12335.17 Da        Isoelectric Point: 9.6244

>NTDB_id=527388 I6I41_RS14400 WP_000578884.1 2882754..2883077(+) (sinR) [Bacillus cereus strain FDAARGOS_1084]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=527388 I6I41_RS14400 WP_000578884.1 2882754..2883077(+) (sinR) [Bacillus cereus strain FDAARGOS_1084]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682