Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   K6969_RS09035 Genome accession   NZ_CP082205
Coordinates   1884655..1885305 (-) Length   216 a.a.
NCBI ID   WP_024376704.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1879655..1890305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS09015 (K6969_08905) xseA 1879707..1881050 (-) 1344 WP_014637117.1 exodeoxyribonuclease VII large subunit -
  K6969_RS09020 (K6969_08910) - 1881216..1882124 (+) 909 WP_029178827.1 neutral zinc metallopeptidase -
  K6969_RS09025 (K6969_08915) - 1882333..1882884 (-) 552 WP_024418639.1 isoprenylcysteine carboxyl methyltransferase family protein -
  K6969_RS09030 (K6969_08920) - 1883283..1884653 (-) 1371 WP_174852210.1 sensor histidine kinase -
  K6969_RS09035 (K6969_08925) scnR 1884655..1885305 (-) 651 WP_024376704.1 response regulator transcription factor Regulator
  K6969_RS09040 (K6969_08930) - 1885534..1886235 (+) 702 WP_015647212.1 CPBP family intramembrane glutamic endopeptidase -
  K6969_RS09045 (K6969_08935) - 1886488..1886973 (-) 486 WP_171942559.1 hypothetical protein -
  K6969_RS09050 (K6969_08940) - 1887216..1887788 (-) 573 WP_171942558.1 hypothetical protein -
  K6969_RS12395 (K6969_08945) - 1887748..1887888 (-) 141 WP_079267632.1 YSIRK-type signal peptide-containing protein -
  K6969_RS09055 (K6969_08950) - 1888129..1888977 (-) 849 WP_029174040.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  K6969_RS09060 (K6969_08955) amiE 1889211..1889945 (-) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24768.88 Da        Isoelectric Point: 4.6866

>NTDB_id=527367 K6969_RS09035 WP_024376704.1 1884655..1885305(-) (scnR) [Streptococcus suis strain AKJ18]
MSRILVVEDDIVISQVVCEFLKEYGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=527367 K6969_RS09035 WP_024376704.1 1884655..1885305(-) (scnR) [Streptococcus suis strain AKJ18]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAATATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGATACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGTGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTAACAAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATACGTAAAAAATTGCCGTCACTTCCTTTGAAGACAGTTGTTGGTCGTGGTTATCAAATAG
AGGATACTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

37.838

100

0.389
  micA Streptococcus pneumoniae Cp1015

36.889

100

0.384
  vicR Streptococcus mutans UA159

36.283

100

0.38