Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I6I77_RS13925 Genome accession   NZ_CP068132
Coordinates   2830243..2831916 (-) Length   557 a.a.
NCBI ID   WP_060792432.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_1120     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2825243..2836916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I77_RS13900 (I6I77_13890) pstB 2825440..2826246 (-) 807 WP_005225783.1 phosphate ABC transporter ATP-binding protein PstB -
  I6I77_RS13905 (I6I77_13895) pstA 2826260..2827144 (-) 885 WP_005225782.1 phosphate ABC transporter permease PstA -
  I6I77_RS13910 (I6I77_13900) pstC 2827144..2828064 (-) 921 WP_005225781.1 phosphate ABC transporter permease subunit PstC -
  I6I77_RS13915 (I6I77_13905) - 2828162..2829016 (-) 855 WP_060792430.1 phosphate ABC transporter substrate-binding protein PstS -
  I6I77_RS13920 (I6I77_13910) - 2829416..2830147 (-) 732 WP_172462571.1 alpha/beta hydrolase -
  I6I77_RS13925 (I6I77_13915) recN 2830243..2831916 (-) 1674 WP_060792432.1 DNA repair protein RecN Machinery gene
  I6I77_RS13930 (I6I77_13920) argR 2831932..2832381 (-) 450 WP_005225777.1 arginine repressor -
  I6I77_RS13935 (I6I77_13925) - 2832479..2833300 (-) 822 WP_060792433.1 TlyA family RNA methyltransferase -
  I6I77_RS13940 (I6I77_13930) - 2833297..2834193 (-) 897 WP_060792434.1 polyprenyl synthetase family protein -
  I6I77_RS13945 (I6I77_13935) - 2834190..2834411 (-) 222 WP_005225774.1 exodeoxyribonuclease VII small subunit -
  I6I77_RS13950 (I6I77_13940) xseA 2834392..2835744 (-) 1353 WP_060792435.1 exodeoxyribonuclease VII large subunit -
  I6I77_RS13955 (I6I77_13945) - 2835745..2836596 (-) 852 WP_005235351.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62632.74 Da        Isoelectric Point: 4.5175

>NTDB_id=527367 I6I77_RS13925 WP_060792432.1 2830243..2831916(-) (recN) [Enterococcus casseliflavus strain FDAARGOS_1120]
MLLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSSDYLRQGTEKCRLEGIFEWPNQQEFKELT
ADLGIDEEEILIVQRDISQSGKNICRVNGRTVTLSVLRQIGLFLVDIQGQNEHQELLQPEKHLALMDGFGDDAFKAELAS
YRQAYQAYRSLEKHVRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEEQLIDEREKLTNYQKIVDALGQSYGALSAEE
VNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYYLLQDAATDISRQVDNLELDEGRLEEVISRLETIRQLKRKYGESI
PVILAYYDEISKEISESAYTEGQLEQLEEELAQKAEAVWQLAEALHVKRRELAHRLEKEIVQELKELYMEHAQFEVRFAS
GSKQLSSSGFDTVEFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKIAK
IAANSQVLCITHLPQVAAVADNQYFIEKAIQEGRTETHVRKLSEEERVAEIARMLSGAEITDLTIEHARELLALAHR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=527367 I6I77_RS13925 WP_060792432.1 2830243..2831916(-) (recN) [Enterococcus casseliflavus strain FDAARGOS_1120]
ATGCTTTTAGAATTGTCGATCCAAAATTTTGCGATTATCTCCAACCTGCACCTGTCTTTTCATGAGGGGATGACGGCTCT
AACAGGTGAAACCGGTGCTGGGAAATCAATCATTATCGATGCGATGGGCTTACTAGCTGGTGGCAGAGGGTCCAGTGACT
ATTTGCGTCAAGGCACAGAAAAATGCCGTTTGGAAGGGATTTTTGAATGGCCGAATCAGCAAGAGTTCAAAGAGTTGACC
GCAGATCTGGGTATTGATGAAGAGGAAATTCTGATCGTACAACGAGATATCTCTCAATCGGGGAAAAATATTTGTCGTGT
CAATGGTCGAACCGTTACCTTGTCGGTTTTGCGTCAAATCGGTTTATTCTTAGTCGATATCCAAGGACAAAATGAGCATC
AGGAGCTGCTGCAGCCAGAAAAACATTTGGCGTTGATGGATGGTTTTGGAGATGATGCCTTTAAAGCGGAACTTGCAAGT
TACCGTCAAGCCTATCAAGCCTATCGCTCCTTAGAAAAGCATGTGCGGACCATCCAAGAAAATGAGCAGCTCTATGTGCA
GCGAATGGATATGCTGCGTTTTCAACAAGAAGAGATCGCCCAAGCGGAATTGATGGAAAATGAAGAAGAGCAGCTGATCG
ATGAACGAGAAAAACTGACCAATTATCAAAAAATCGTGGATGCTCTCGGGCAAAGCTATGGCGCTCTATCTGCCGAAGAG
GTCAATAGCCTAGATGGGGTCAGTGTGGCATTATCAGAAATCCAGTCGATCGCCCATCTTGATCCTGCGTATGAAAAAAT
CAGTGAAGCGATCCAAAGTGCATACTACCTGCTACAGGATGCAGCCACTGATATTTCTCGGCAAGTCGACAATCTTGAAT
TAGATGAAGGTCGTCTAGAAGAAGTCATTTCACGACTAGAAACGATTCGTCAATTGAAGCGCAAATACGGGGAGTCAATT
CCTGTGATTCTTGCTTATTATGATGAGATTAGTAAAGAAATCAGCGAGTCTGCCTATACGGAAGGTCAGTTGGAACAATT
AGAAGAAGAGCTTGCCCAAAAAGCTGAAGCAGTTTGGCAGCTGGCGGAAGCCTTGCACGTCAAACGACGTGAATTGGCTC
ATCGTTTAGAAAAAGAAATCGTTCAAGAGTTAAAAGAGCTGTATATGGAGCACGCGCAATTTGAAGTGCGGTTTGCATCT
GGCTCAAAACAATTAAGCAGCAGCGGCTTTGATACCGTGGAGTTTTATTTGACCACCAACCCCGGTGAAGGCATGAAACC
GTTAGTGCGAGTTGCTTCTGGAGGAGAGCTTTCCCGGATCTTATTAGCGCTTAAATCGATTTTCTCCCGCAAGCAAGGAA
TCACTAGTATTGTCTTTGATGAGGTGGATACTGGGGTCAGTGGCCGAGTAGCTCAGGCGATCGCCGAAAAAATCGCCAAG
ATCGCTGCGAATTCGCAAGTCTTGTGTATCACCCACTTGCCGCAAGTAGCGGCTGTGGCGGACAATCAATATTTTATCGA
AAAAGCAATTCAAGAAGGTCGGACAGAAACCCATGTCCGTAAATTATCAGAAGAAGAACGAGTGGCTGAGATCGCCCGTA
TGCTCTCAGGTGCAGAAATCACCGATTTAACGATCGAACATGCACGAGAACTATTGGCGCTGGCTCACCGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.719

100

0.488