Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6I77_RS10240 Genome accession   NZ_CP068132
Coordinates   2059047..2060864 (+) Length   605 a.a.
NCBI ID   WP_016610833.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_1120     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2054047..2065864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I77_RS10220 (I6I77_10210) - 2054241..2055977 (+) 1737 WP_060792242.1 ABC transporter ATP-binding protein -
  I6I77_RS10225 (I6I77_10215) spxA 2056687..2057085 (+) 399 WP_003127030.1 transcriptional regulator SpxA -
  I6I77_RS10230 (I6I77_10220) - 2057238..2057888 (+) 651 WP_005229698.1 adaptor protein MecA -
  I6I77_RS10235 (I6I77_10225) - 2057989..2058804 (+) 816 WP_236596038.1 competence protein CoiA -
  I6I77_RS17110 - 2058808..2058978 (+) 171 WP_236596039.1 hypothetical protein -
  I6I77_RS10240 (I6I77_10230) pepF 2059047..2060864 (+) 1818 WP_016610833.1 oligoendopeptidase F Regulator
  I6I77_RS10245 (I6I77_10235) - 2060995..2061651 (-) 657 WP_005229705.1 ClpXP adapter SpxH family protein -
  I6I77_RS10250 (I6I77_10240) - 2061760..2062335 (-) 576 WP_060792243.1 CYTH domain-containing protein -
  I6I77_RS10255 (I6I77_10245) - 2062532..2063200 (+) 669 WP_005229708.1 GTP pyrophosphokinase family protein -
  I6I77_RS10260 (I6I77_10250) - 2063206..2064003 (+) 798 WP_026008090.1 NAD kinase -
  I6I77_RS10265 (I6I77_10255) - 2064008..2064907 (+) 900 WP_060792244.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69094.68 Da        Isoelectric Point: 4.6993

>NTDB_id=527359 I6I77_RS10240 WP_016610833.1 2059047..2060864(+) (pepF) [Enterococcus casseliflavus strain FDAARGOS_1120]
MSETKQLPARESIPVEKTWDLTKIYADDAAFDIEFQEIQAQVKEASRYQGTLADGPQAFLSALEFVLALSRRLEKLYVYS
HLKNDQDTANTTYQGLYAKASNLVAQVSEAVAWFDPELLTMSDETIWGYFDQEPKLAVYRHMIEKTINERPHVLPAEQEA
LLAGAGEIFGAPGNIFSVLNNADLDFPVVEDENGEKVQLSHGVYGELMESTDRSVREAAFKGLYGVYEQFRNTFAQTLST
NIKAHNFKAKARKFDSARQAALSANHIPESVYDTLVDVVNQHLPLLHRYMALRKRLLAVDTLHMYDVYTPILGEAPIRYT
YEEAVEKAKEALKPLGEEYLAVVEEAFSNRWIDVVENKGKRSGAYSSGAYDTLPYILMNWNDRLDQLFTLVHEMGHSVHS
YFTRNNQPYAYGDYSIFLAEIASTTNENILTEYMLQTETDPRVKAYVLNHFLDGFKGTIFRQTQFAEFEHFMHVEDAKGT
PLTSEFLSENYAELNAKYYGPSVEKDPEIRLEWSRIPHFYYNYYVYQYSTGFSAASALAKKILAGEPDALTNYLNYLKAG
RSDYPIEVMKKAGVDMTKADYIEDAMKVFEQRLNELEELVKEIEA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=527359 I6I77_RS10240 WP_016610833.1 2059047..2060864(+) (pepF) [Enterococcus casseliflavus strain FDAARGOS_1120]
ATGTCAGAAACAAAACAATTACCAGCACGTGAATCGATTCCAGTCGAAAAAACGTGGGACTTAACGAAAATCTATGCCGA
TGATGCGGCTTTTGACATAGAATTTCAAGAGATCCAAGCACAAGTCAAAGAAGCAAGTCGTTACCAAGGCACTTTAGCCG
ATGGGCCGCAAGCCTTCTTATCCGCATTAGAATTTGTTTTAGCGCTTTCTCGTCGTTTAGAGAAACTCTATGTATACAGT
CATTTGAAAAACGACCAAGATACTGCCAATACGACGTATCAAGGCTTGTATGCAAAAGCAAGTAACTTGGTTGCGCAAGT
AAGTGAAGCCGTTGCTTGGTTTGATCCTGAGCTATTGACAATGTCTGATGAAACGATTTGGGGCTATTTCGATCAAGAGC
CGAAACTAGCTGTTTATCGTCATATGATCGAAAAAACCATCAACGAGCGTCCACATGTCTTGCCAGCGGAGCAAGAAGCG
TTATTAGCTGGTGCTGGCGAAATTTTTGGGGCACCTGGCAACATTTTTTCTGTTTTAAACAATGCTGATTTGGATTTTCC
AGTAGTTGAAGACGAAAACGGGGAAAAAGTACAGTTATCTCATGGTGTATACGGTGAGTTGATGGAAAGCACGGATCGAT
CTGTCCGTGAAGCAGCCTTTAAAGGTCTTTATGGTGTCTATGAGCAATTCCGCAATACCTTTGCCCAAACATTAAGCACC
AATATCAAAGCTCATAACTTTAAAGCAAAAGCCCGCAAATTTGATTCGGCACGGCAAGCCGCTTTGAGTGCCAACCATAT
TCCTGAAAGTGTCTACGATACATTAGTGGACGTCGTCAATCAGCACCTGCCATTGTTGCATCGTTATATGGCATTAAGAA
AACGCCTATTGGCTGTCGATACGTTGCATATGTATGATGTTTATACGCCAATTTTAGGGGAAGCGCCTATTCGTTATACC
TATGAAGAAGCGGTCGAAAAAGCGAAAGAAGCGTTAAAACCATTAGGTGAAGAATACCTTGCAGTGGTTGAAGAAGCCTT
CAGCAATCGGTGGATCGATGTCGTTGAAAACAAAGGCAAACGCAGTGGCGCGTATTCTTCTGGTGCCTATGATACGCTGC
CATATATCCTGATGAACTGGAATGATCGATTGGATCAACTCTTTACTCTTGTTCATGAAATGGGACACAGTGTGCATAGT
TACTTTACACGTAATAACCAGCCTTACGCCTATGGGGATTATTCGATCTTTTTAGCGGAAATCGCTTCAACCACCAATGA
AAATATTTTGACAGAGTATATGCTGCAGACTGAAACAGATCCACGGGTCAAAGCTTATGTCTTGAATCATTTTCTCGATG
GCTTCAAAGGAACGATTTTCCGTCAAACGCAATTTGCCGAGTTTGAACACTTCATGCACGTGGAAGATGCGAAAGGAACG
CCATTGACCAGTGAGTTCTTAAGCGAGAACTATGCCGAGTTAAATGCAAAATACTACGGACCTTCTGTTGAAAAAGATCC
TGAGATTCGTCTTGAGTGGTCACGCATTCCGCATTTCTATTACAATTACTATGTTTACCAGTATTCAACCGGATTTTCGG
CAGCTTCTGCTTTAGCGAAGAAAATCTTAGCAGGTGAACCAGATGCCTTAACCAACTATTTGAACTATTTGAAAGCTGGA
CGCAGTGATTATCCAATCGAAGTCATGAAAAAAGCGGGCGTCGATATGACAAAAGCAGATTATATTGAAGACGCGATGAA
AGTATTTGAGCAACGCTTGAATGAATTGGAAGAACTCGTCAAAGAAATTGAAGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.492

98.017

0.554