Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   K6969_RS04500 Genome accession   NZ_CP082205
Coordinates   902440..902922 (-) Length   160 a.a.
NCBI ID   WP_029173580.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 897440..907922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS04455 - 897705..897962 (+) 258 WP_248029882.1 DUF2087 domain-containing protein -
  K6969_RS04460 (K6969_04395) - 897938..898123 (+) 186 WP_029188188.1 hypothetical protein -
  K6969_RS04465 (K6969_04400) tnpB 898104..898454 (+) 351 WP_029188189.1 IS66 family insertion sequence element accessory protein TnpB -
  K6969_RS04470 (K6969_04405) - 898505..898711 (+) 207 WP_029178852.1 transposase -
  K6969_RS04475 (K6969_04410) - 898665..900017 (+) 1353 WP_029943010.1 IS66-like element short variant transposase -
  K6969_RS04480 (K6969_04415) - 900088..900210 (+) 123 Protein_861 DUF2087 domain-containing protein -
  K6969_RS04485 (K6969_04420) - 900231..900533 (-) 303 WP_029173577.1 hypothetical protein -
  K6969_RS04490 (K6969_04425) - 900722..901465 (+) 744 WP_029173578.1 polyphosphate polymerase domain-containing protein -
  K6969_RS04495 (K6969_04430) - 901452..902129 (+) 678 WP_029173579.1 DUF4956 domain-containing protein -
  K6969_RS04500 (K6969_04435) mutX 902440..902922 (-) 483 WP_029173580.1 NUDIX hydrolase Machinery gene
  K6969_RS04505 (K6969_04440) folE 903079..903642 (+) 564 WP_029173581.1 GTP cyclohydrolase I FolE -
  K6969_RS04510 (K6969_04445) folP 903651..904463 (+) 813 WP_029173582.1 dihydropteroate synthase -
  K6969_RS04515 (K6969_04450) folB 904456..904818 (+) 363 WP_012027113.1 dihydroneopterin aldolase -
  K6969_RS04520 (K6969_04455) folK 904815..905309 (+) 495 WP_024418459.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K6969_RS04525 (K6969_04460) - 905331..906641 (+) 1311 WP_029173583.1 GntP family permease -
  K6969_RS04530 (K6969_04465) - 906712..907860 (-) 1149 WP_014637706.1 cobalamin-independent methionine synthase II family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18542.82 Da        Isoelectric Point: 4.4175

>NTDB_id=527344 K6969_RS04500 WP_029173580.1 902440..902922(-) (mutX) [Streptococcus suis strain AKJ18]
MTKKPVQLATICYIDNGKEYLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDNLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=527344 K6969_RS04500 WP_029173580.1 902440..902922(-) (mutX) [Streptococcus suis strain AKJ18]
ATGACCAAAAAACCTGTCCAACTGGCTACGATTTGCTACATTGATAATGGTAAGGAATATCTTCTCCTTCATCGAAACAA
GAAAGAAAATGACGTCCATCAAGGAAAATGGATTGGAGTTGGTGGCAAACTGGAGCCTGGTGAAACACCGCAAGCTTGTG
CCATTCGCGAGGTCTTTGAGGAAACTGGACTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACCTGGGAAGGGGACAGACATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGACAACTTGCTGGATTACAGCGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

80.392

95.625

0.769