Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6I78_RS11645 Genome accession   NZ_CP068128
Coordinates   2493844..2495661 (-) Length   605 a.a.
NCBI ID   WP_201705103.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_1121     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2488844..2500661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I78_RS11620 (I6I78_11620) - 2489800..2490699 (-) 900 WP_201705099.1 RluA family pseudouridine synthase -
  I6I78_RS11625 (I6I78_11625) - 2490704..2491501 (-) 798 WP_201705984.1 NAD kinase -
  I6I78_RS11630 (I6I78_11630) - 2491507..2492175 (-) 669 WP_201705100.1 GTP pyrophosphokinase -
  I6I78_RS11635 (I6I78_11635) - 2492371..2492946 (+) 576 WP_201705101.1 CYTH domain-containing protein -
  I6I78_RS11640 (I6I78_11640) - 2493055..2493711 (+) 657 WP_201705102.1 DsbA family protein -
  I6I78_RS11645 (I6I78_11645) pepF 2493844..2495661 (-) 1818 WP_201705103.1 oligoendopeptidase F Regulator
  I6I78_RS11650 (I6I78_11650) - 2495722..2496591 (-) 870 Protein_2296 competence protein CoiA -
  I6I78_RS11655 (I6I78_11655) - 2496821..2497471 (-) 651 WP_077452520.1 adaptor protein MecA -
  I6I78_RS11660 (I6I78_11660) spxA 2497624..2498022 (-) 399 WP_003127030.1 transcriptional regulator SpxA -
  I6I78_RS11665 (I6I78_11665) - 2498732..2500470 (-) 1739 Protein_2299 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69097.56 Da        Isoelectric Point: 4.6382

>NTDB_id=527324 I6I78_RS11645 WP_201705103.1 2493844..2495661(-) (pepF) [Enterococcus casseliflavus strain FDAARGOS_1121]
MSETKQLPARESIPVEKTWDLTKIYADDADFDIEFQEIQAQVKEASRYQGTLADGPQAFLAALEFVLDLSRRLEKLYVYS
HLKNDQDTANTTYQGLYAKASSLVAQVSEAVAWFDPELLTMSDETIWGYFDQEPKLAVYRHMIEKTINERPHVLPADQEA
LLAGAGEIFGAPGNIFSVLNNADLDFPVVEDENGEKVQLSHGVYGELMESTDRSVREAAFKGLYGVYEQFRNTFAQTLST
NIKAHNFKAKARKYDSARQAALSANHIPESVYDTLVDVVNQHLPLLHRYMALRKRLLAVDTLHMYDVYTPILGEAPIRYT
YEEAVEKAKEALNPLGEEYLAVVEEAFSNRWIDVVENKGKRSGAYSSGAYDTLPYILMNWNDRLDQLFTLVHEMGHSVHS
YFTRNNQPYAYGDYSIFLAEIASTTNENILTEYMLQTETDPRVRAYVLNHFLDGFKGTIFRQTQFAEFEHFMHVEDAKGT
PLTSEFLSENYAELNAKYYGPSVEKDPEIRLEWSRIPHFYYNYYVYQYSTGFSAASALAKKILAGEPDALTNYLNYLKAG
RSDYPIEVMKKAGVDMTKADYIEDAMKVFEQRLNELEALVKEIEA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=527324 I6I78_RS11645 WP_201705103.1 2493844..2495661(-) (pepF) [Enterococcus casseliflavus strain FDAARGOS_1121]
ATGTCAGAAACAAAACAATTACCAGCACGTGAATCGATCCCAGTCGAAAAAACGTGGGACTTAACGAAAATCTATGCCGA
TGATGCGGATTTTGACATAGAATTTCAAGAAATTCAAGCACAGGTCAAAGAAGCCAGCCGTTACCAAGGCACTTTAGCAG
ACGGTCCGCAAGCCTTTTTAGCCGCTTTAGAATTTGTCTTAGATCTTTCTCGCCGCTTGGAGAAACTGTATGTCTACAGC
CATCTAAAAAACGACCAAGACACCGCTAATACGACTTATCAAGGCTTATATGCGAAAGCCAGCAGTTTAGTTGCGCAAGT
AAGTGAAGCCGTTGCTTGGTTTGATCCCGAGTTATTGACGATGTCCGATGAAACGATTTGGGGCTATTTCGATCAAGAAC
CTAAGTTAGCAGTTTATCGTCATATGATCGAAAAAACCATCAACGAGCGGCCCCATGTTTTGCCTGCCGATCAAGAAGCG
TTATTGGCCGGTGCTGGCGAAATTTTTGGTGCCCCTGGCAATATTTTCTCTGTTTTAAACAATGCTGACTTGGATTTTCC
AGTCGTTGAAGACGAAAATGGGGAAAAAGTGCAGCTGTCACATGGTGTCTACGGTGAGTTGATGGAAAGTACAGATCGCT
CTGTCCGAGAAGCGGCCTTTAAAGGTCTCTATGGCGTCTATGAGCAATTCCGTAATACCTTTGCCCAAACCTTAAGTACG
AATATCAAAGCCCACAACTTTAAAGCCAAAGCCCGTAAATACGATTCCGCACGCCAAGCCGCTTTGAGTGCCAATCATAT
TCCTGAAAGTGTCTATGATACGTTAGTGGACGTCGTTAATCAGCATTTGCCGTTACTACACCGTTATATGGCATTAAGAA
AACGCCTGTTGGCTGTCGACACACTTCATATGTATGATGTGTACACGCCGATTTTAGGGGAAGCACCGATTCGCTACACC
TATGAAGAAGCAGTCGAAAAAGCGAAAGAAGCGCTAAACCCATTAGGGGAAGAGTATCTCGCTGTAGTTGAAGAAGCCTT
CAGCAATCGGTGGATCGATGTCGTTGAAAACAAAGGCAAACGCAGTGGTGCCTATTCGTCAGGTGCTTATGACACGCTGC
CTTATATCTTAATGAACTGGAATGATCGATTGGATCAACTCTTCACCCTTGTTCATGAGATGGGGCACAGTGTGCATAGT
TATTTCACAAGGAATAACCAGCCTTATGCCTATGGCGATTATTCGATTTTCTTAGCAGAAATCGCTTCGACGACGAACGA
AAATATATTAACGGAATACATGCTTCAGACTGAGACTGATCCACGGGTTAGAGCCTATGTCTTGAATCATTTTCTTGATG
GCTTCAAAGGTACGATTTTCCGTCAAACGCAATTTGCCGAGTTCGAGCATTTCATGCACGTAGAAGATGCGAAAGGAACA
CCGTTGACCAGTGAATTCTTAAGCGAGAATTATGCCGAGTTAAATGCGAAATACTACGGACCATCAGTTGAAAAAGATCC
TGAGATTCGTCTCGAATGGTCACGAATCCCTCATTTCTATTACAATTACTATGTCTACCAATATTCAACTGGTTTTTCCG
CAGCTTCTGCTTTGGCGAAGAAAATCCTAGCTGGCGAACCGGATGCCTTAACCAACTATTTGAACTATTTGAAAGCCGGA
CGTAGTGATTATCCAATCGAAGTCATGAAAAAAGCAGGCGTCGATATGACGAAAGCAGATTATATTGAAGATGCGATGAA
AGTATTTGAACAACGCTTGAATGAATTGGAAGCACTCGTTAAAGAAATCGAAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.83

98.017

0.557