Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I6I78_RS08135 Genome accession   NZ_CP068128
Coordinates   1743405..1745078 (+) Length   557 a.a.
NCBI ID   WP_077454327.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_1121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1738405..1750078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I78_RS08105 (I6I78_08105) - 1738725..1739576 (+) 852 WP_086292168.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  I6I78_RS08110 (I6I78_08110) xseA 1739577..1740929 (+) 1353 WP_086292169.1 exodeoxyribonuclease VII large subunit -
  I6I78_RS08115 (I6I78_08115) - 1740910..1741131 (+) 222 WP_086292170.1 exodeoxyribonuclease VII small subunit -
  I6I78_RS08120 (I6I78_08120) - 1741128..1742024 (+) 897 WP_086292171.1 polyprenyl synthetase family protein -
  I6I78_RS08125 (I6I78_08125) - 1742021..1742842 (+) 822 WP_086292172.1 TlyA family RNA methyltransferase -
  I6I78_RS08130 (I6I78_08130) argR 1742940..1743389 (+) 450 WP_005235362.1 arginine repressor -
  I6I78_RS08135 (I6I78_08135) recN 1743405..1745078 (+) 1674 WP_077454327.1 DNA repair protein RecN Machinery gene
  I6I78_RS08140 (I6I78_08140) - 1745175..1745906 (+) 732 WP_185932338.1 alpha/beta hydrolase -
  I6I78_RS08145 (I6I78_08145) - 1746305..1747159 (+) 855 WP_086292174.1 phosphate ABC transporter substrate-binding protein PstS -
  I6I78_RS08150 (I6I78_08150) pstC 1747257..1748177 (+) 921 WP_077454324.1 phosphate ABC transporter permease subunit PstC -
  I6I78_RS08155 (I6I78_08155) pstA 1748177..1749061 (+) 885 WP_077454323.1 phosphate ABC transporter permease PstA -
  I6I78_RS08160 (I6I78_08160) pstB 1749075..1749881 (+) 807 WP_005225783.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62629.82 Da        Isoelectric Point: 4.5399

>NTDB_id=527316 I6I78_RS08135 WP_077454327.1 1743405..1745078(+) (recN) [Enterococcus casseliflavus strain FDAARGOS_1121]
MLLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSSDYLRQGAEKCRLEGIFEWPNQQEFKELT
ADLGIDEEEVLIVQRDISQSGKTICRVNGRTVTLSVLRQIGLFLVDIQGQNEHQELLQPEKHLALMDGFGDDSFKAELAD
YRQAYQSYRSLEKHVRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEELLIDEREKLTNYQKIVDALGQSYGALSAEE
VNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYYLLQDAATDISRQVDNLELDEGRLEEVISRLETIRQLKRKYGESI
PVILAYYDEISKEISESAYTEGQLEQLEEELAQKAEAVWQLAEALHVKRRELAHRLEKEIVQELKELYMEHAQFEVRFAP
GSKQLSSSGFDTVEFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKIAK
IAANSQVLCITHLPQVAAVADNQYFIEKAIQEGRTETHVRKLSKEERVAEIARMLSGAEITDLTIEHARELLALAHR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=527316 I6I78_RS08135 WP_077454327.1 1743405..1745078(+) (recN) [Enterococcus casseliflavus strain FDAARGOS_1121]
ATGCTTTTAGAATTGTCGATCCAAAATTTTGCGATTATTTCCAACTTACACTTATCTTTCCATGAGGGAATGACGGCACT
GACAGGTGAGACAGGTGCCGGGAAATCAATTATTATCGATGCGATGGGTTTGCTAGCAGGCGGTAGAGGTTCCAGCGACT
ATTTGCGTCAAGGAGCAGAGAAATGTCGTTTAGAAGGGATCTTCGAATGGCCGAATCAGCAGGAGTTCAAAGAGTTGACC
GCAGATTTAGGTATTGATGAAGAAGAAGTTTTGATCGTACAACGAGATATCTCTCAATCAGGGAAAACTATTTGTCGTGT
CAATGGTCGAACCGTTACCTTGTCGGTTTTGCGTCAAATCGGTTTATTCTTAGTCGATATCCAAGGACAAAATGAGCATC
AAGAGCTGCTGCAACCGGAAAAACATTTGGCATTGATGGATGGATTTGGGGATGATAGCTTTAAAGCGGAACTTGCGGAT
TACCGTCAAGCCTATCAAAGCTATCGCTCCTTAGAAAAACATGTCCGAACCATTCAGGAAAATGAACAGCTCTATGTGCA
ACGAATGGACATGCTGCGTTTTCAACAAGAAGAGATCGCCCAAGCCGAATTGATGGAAAATGAAGAAGAACTGCTGATCG
ACGAACGGGAAAAACTCACGAACTATCAAAAAATCGTGGATGCCTTGGGACAAAGCTATGGTGCTCTATCAGCTGAGGAA
GTCAATAGTTTAGATGGGGTCAGTGTGGCATTGTCAGAGATCCAGTCGATCGCCCATCTTGATCCTGCGTATGAAAAAAT
CAGTGAAGCGATCCAAAGCGCGTATTACTTGTTGCAAGATGCAGCCACCGATATTTCGCGACAAGTCGACAACCTTGAAT
TAGATGAAGGCCGACTGGAAGAAGTCATTTCGCGGCTGGAAACGATTCGTCAATTGAAGCGCAAATACGGGGAGTCGATT
CCTGTGATCCTAGCTTATTATGATGAGATCAGCAAAGAAATCAGCGAATCAGCCTATACGGAAGGTCAGTTGGAGCAATT
AGAAGAAGAGCTTGCCCAAAAAGCTGAAGCTGTTTGGCAGTTGGCGGAAGCCTTGCACGTCAAACGACGTGAATTGGCTC
ATCGTTTAGAAAAAGAAATCGTTCAAGAGTTAAAAGAGCTGTATATGGAACACGCGCAGTTTGAAGTACGGTTCGCACCT
GGCTCAAAACAATTGAGTAGCAGCGGCTTTGATACTGTGGAGTTTTATCTGACTACCAACCCCGGTGAAGGCATGAAGCC
GTTAGTGCGGGTTGCTTCTGGGGGAGAACTTTCACGGATCTTACTGGCTCTCAAATCAATTTTCTCTCGGAAACAAGGAA
TCACCAGCATTGTCTTTGATGAAGTGGATACTGGGGTCAGTGGCCGAGTAGCTCAGGCGATCGCCGAAAAAATCGCCAAG
ATTGCAGCCAATTCGCAAGTTTTGTGTATCACTCACTTGCCGCAAGTAGCTGCTGTAGCGGATAATCAATATTTTATTGA
AAAAGCAATTCAAGAAGGACGGACGGAAACCCATGTCCGTAAACTATCTAAAGAAGAACGAGTGGCAGAGATTGCCCGTA
TGCTCTCAGGTGCAGAAATCACCGATTTAACGATCGAACATGCACGAGAACTATTGGCACTGGCACACCGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.544

100

0.487