Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I78_RS01910 Genome accession   NZ_CP068128
Coordinates   388684..390054 (+) Length   456 a.a.
NCBI ID   WP_005226394.1    Uniprot ID   A0A242CQN0
Organism   Enterococcus casseliflavus strain FDAARGOS_1121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 383684..395054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I78_RS01880 (I6I78_01880) - 384150..384968 (+) 819 WP_077453236.1 ZIP family metal transporter -
  I6I78_RS01885 (I6I78_01885) - 385024..385227 (-) 204 WP_010748476.1 hypothetical protein -
  I6I78_RS01890 (I6I78_01890) - 385378..385779 (+) 402 WP_142973398.1 DUF4809 family protein -
  I6I78_RS01895 (I6I78_01895) - 385884..387128 (-) 1245 WP_201705548.1 glutamate-5-semialdehyde dehydrogenase -
  I6I78_RS01900 (I6I78_01900) proB 387125..387940 (-) 816 WP_201705549.1 glutamate 5-kinase -
  I6I78_RS01905 (I6I78_01905) - 388130..388639 (+) 510 WP_081117601.1 dUTP diphosphatase -
  I6I78_RS01910 (I6I78_01910) radA 388684..390054 (+) 1371 WP_005226394.1 DNA repair protein RadA Machinery gene
  I6I78_RS17750 - 390056..390187 (+) 132 WP_269116840.1 hypothetical protein -
  I6I78_RS01915 (I6I78_01915) - 390223..391362 (+) 1140 WP_005226396.1 PIN/TRAM domain-containing protein -
  I6I78_RS01920 (I6I78_01920) gltX 391532..392989 (+) 1458 WP_201705550.1 glutamate--tRNA ligase -
  I6I78_RS01925 (I6I78_01925) epsC 393249..393785 (+) 537 WP_081117733.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49604.28 Da        Isoelectric Point: 8.3034

>NTDB_id=527308 I6I78_RS01910 WP_005226394.1 388684..390054(+) (radA) [Enterococcus casseliflavus strain FDAARGOS_1121]
MAKKAKSQFVCQNCGYSSPKYLGKCPNCGSWNSMVEEVIQETADRRVRTTLTGQKMQPTKIADVVPKKEPRVQTKLAELN
RVLGGGVVPGSLILIGGDPGIGKSTLLLQVSQQLAAIGGTVLYVSGEESAEQIKMRAQRLGAIDTEFYLYGETDMSEISK
AIENIRPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEKHHSFRILRAVKNRFGSTNEIGIFEMEEGGLKEVANPSQVFLEERLEGATGSAIVVAMEGSRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTSPTECFIGEIGLTG
EIRRVNAIEQRVKEVQKLGFTKVYLPKNNLTGWQPPKGIEVEGVSTLAETLRKVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=527308 I6I78_RS01910 WP_005226394.1 388684..390054(+) (radA) [Enterococcus casseliflavus strain FDAARGOS_1121]
ATGGCAAAAAAAGCAAAAAGTCAATTTGTCTGTCAAAACTGCGGGTATAGTTCCCCTAAGTATTTAGGAAAATGCCCCAA
TTGCGGCAGCTGGAATTCAATGGTAGAAGAAGTGATCCAAGAAACTGCTGATCGTCGTGTACGAACAACATTGACCGGTC
AAAAGATGCAGCCGACGAAAATTGCCGATGTCGTACCGAAAAAAGAACCGCGGGTCCAAACGAAACTGGCTGAATTGAAT
CGCGTCTTAGGCGGCGGCGTGGTCCCAGGTTCCTTGATTTTGATCGGTGGGGATCCCGGAATCGGAAAATCGACGCTGCT
CTTGCAAGTTTCCCAGCAATTAGCAGCGATCGGCGGAACGGTCTTGTATGTGTCAGGAGAAGAAAGTGCCGAGCAGATCA
AAATGCGGGCGCAGCGCTTAGGCGCCATCGACACGGAATTTTATCTCTATGGGGAAACGGACATGTCAGAGATCAGTAAA
GCGATCGAAAACATCCGTCCAGATTATGTGATCATCGATTCGATCCAAACCATGACCCAACCGGATATCACCAGTGTGGC
AGGCAGTGTCAGCCAAGTGCGAGAAACGACCGCAGAATTGCTGAAAATCGCTAAAACCAATGGCATCGCCATCTTTATCG
TTGGCCACGTGACGAAGGAAGGCTCGATCGCAGGACCGCGGATGCTGGAGCACATGGTGGATACCGTCTTGTATTTCGAA
GGCGAAAAGCACCACAGCTTTCGGATTTTGCGGGCCGTCAAAAACCGCTTTGGGTCCACCAATGAGATCGGGATTTTTGA
AATGGAAGAAGGTGGGTTGAAAGAAGTCGCCAATCCGTCACAAGTCTTTTTGGAAGAACGCTTAGAAGGCGCAACTGGAT
CGGCGATCGTAGTGGCAATGGAAGGCAGTCGGCCAATCTTGGTGGAGATCCAAGCACTGGTCACGCCAACGATGTTCGGC
AATGCCAAACGCACGACGACGGGGCTAGACTTCAACCGCGTCTCGCTGATCATGGCGGTTTTAGAAAAACGGGCAGGCTT
GCTGCTGCAAAATCAAGATGCCTACTTAAAAGCAGCCGGCGGGGTCAAATTAAATGAACCCGCGATCGATCTAGCGATCG
CTGTTAGTATCGCATCTAGCTATAAAGAAAAAGGCACCAGCCCGACGGAGTGTTTTATCGGTGAAATCGGCTTGACGGGT
GAGATTCGCCGAGTCAACGCGATCGAGCAACGGGTCAAAGAGGTGCAAAAACTAGGTTTTACGAAAGTTTATTTGCCGAA
AAACAATCTGACTGGCTGGCAGCCGCCTAAAGGCATCGAAGTCGAAGGCGTGTCTACCTTAGCCGAAACCTTACGGAAAG
TCTTCCGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A242CQN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.725

99.781

0.746
  radA Streptococcus mitis SK321

74.505

99.781

0.743
  radA Streptococcus pneumoniae Rx1

74.505

99.781

0.743
  radA Streptococcus pneumoniae D39

74.505

99.781

0.743
  radA Streptococcus pneumoniae R6

74.505

99.781

0.743
  radA Streptococcus pneumoniae TIGR4

74.505

99.781

0.743
  radA Bacillus subtilis subsp. subtilis str. 168

67.184

98.904

0.664