Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K6974_RS12630 Genome accession   NZ_CP082204
Coordinates   2523841..2525121 (+) Length   426 a.a.
NCBI ID   WP_222337171.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2518841..2530121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS12600 (K6974_12470) - 2519722..2520435 (-) 714 WP_222337175.1 DUF554 domain-containing protein -
  K6974_RS12605 (K6974_12475) - 2520439..2521185 (-) 747 WP_222337174.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  K6974_RS12610 (K6974_12480) prmA 2521187..2522140 (-) 954 WP_222337173.1 50S ribosomal protein L11 methyltransferase -
  K6974_RS12615 (K6974_12485) - 2522609..2522962 (-) 354 WP_222337172.1 ASCH domain-containing protein -
  K6974_RS12620 (K6974_12490) - 2522964..2523434 (-) 471 WP_099808927.1 DUF3013 family protein -
  K6974_RS12625 (K6974_12495) - 2523436..2523771 (-) 336 WP_029187566.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  K6974_RS12630 (K6974_12500) rarA 2523841..2525121 (+) 1281 WP_222337171.1 replication-associated recombination protein A Machinery gene
  K6974_RS12645 (K6974_12515) nrdG 2525562..2526134 (-) 573 WP_222337170.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  K6974_RS12650 (K6974_12520) - 2526149..2526640 (-) 492 WP_222337169.1 GNAT family N-acetyltransferase -
  K6974_RS12655 (K6974_12525) - 2526642..2527988 (-) 1347 WP_222337168.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  K6974_RS12660 - 2527990..2528124 (-) 135 WP_105130096.1 hypothetical protein -

Sequence

Protein


Download         Length: 426 a.a.        Molecular weight: 47054.65 Da        Isoelectric Point: 6.4474

>NTDB_id=527296 K6974_RS12630 WP_222337171.1 2523841..2525121(+) (rarA) [Streptococcus suis strain FJSM5]
MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLMLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELHPLQTSHIRQALE
LALTDSERGFDFPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESEGSRHIDLDAVENSLQKSYISMDKNSDAHYD
ILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVVV
DLALSPKSNSAYLAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLAADYFTAN
DTGKYERALGMTQEKINHLKQNKKKS

Nucleotide


Download         Length: 1281 bp        

>NTDB_id=527296 K6974_RS12630 WP_222337171.1 2523841..2525121(+) (rarA) [Streptococcus suis strain FJSM5]
ATGCCAGCCAATCTCGCTCTTCGTATGCGGCCCAAATCCATTGATGAGGTCATCGGTCAGGAACACCTGGTCGGCCCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCAGGGATTGGCAAGACCT
CGATCGCCTCTGCCATTGCTGGCACGACCAAGTATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAAGCTAAATTTTCTGGCGGTCTGGTTCTCATGCTCGATGAGATTCATCGCCTCAACAAGACCAA
GCAGGACTTCCTACTCCCTCTTTTGGAAAACGGCAATATCATCATGATTGGAGCAACGACGGAAAATCCATTTTTCTCTA
TTTTACCCGCCATTCGCAGTCGGGTGCAGATTTTTGAATTGCATCCTTTGCAAACCAGCCATATCCGACAGGCCTTGGAA
CTAGCTCTGACAGACAGCGAACGCGGTTTTGACTTCCCTGTCACCATTGAGCCTGAGGCTCTGGATTTTCTAGCAAATGC
GACCAACGGTGACCTTCGTGCCGCCTACAATTCGCTGGAACTAGCTGTACTTTCTACCAAGGAAAGCGAGGGGAGTCGCC
ACATTGACCTCGATGCAGTGGAAAATAGCCTGCAAAAGTCTTACATCAGCATGGACAAGAACAGCGATGCCCACTACGAT
ATCCTCTCGGCCCTGCAGAAATCCATTCGAGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGAGGC
GGAAGACCTGCCTAGTCTGGCCCGTCGCTTGACGGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCTCAGA
TTCATACGGTGACGGCCCTTGAAGCGGCCCAGAAAATCGGCTTTCCAGAGGCACGGATTTTGATTGCCAATGTAGTAGTC
GATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCTGGCTATGGATGCAGCTCTGGCTGATTTGCGAAAAAATGGTCA
TCTGCCTATTCCAAATCATCTTCGGGACGGTCATTATGCTGGTAGTAAGGAGCTGGGAAATGCCATTGGTTACCAGTATC
CCCATGCCTATCCTGAAAAATGGGTGGACCAGCAATACCTGCCCGACAAGTTACTGGCTGCGGATTACTTCACCGCCAAC
GACACCGGAAAATACGAGCGTGCCTTGGGCATGACCCAAGAAAAAATCAACCATCTAAAACAAAACAAGAAAAAAAGTTG
A

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.42

97.183

0.577