Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6I79_RS16650 Genome accession   NZ_CP068126
Coordinates   3322549..3324366 (-) Length   605 a.a.
NCBI ID   WP_201689496.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_1122     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3317549..3329366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I79_RS16625 (I6I79_16625) - 3318510..3319409 (-) 900 WP_201689486.1 RluA family pseudouridine synthase -
  I6I79_RS16630 (I6I79_16630) - 3319414..3320211 (-) 798 WP_026008090.1 NAD kinase -
  I6I79_RS16635 (I6I79_16635) - 3320217..3320885 (-) 669 WP_005229708.1 GTP pyrophosphokinase family protein -
  I6I79_RS16640 (I6I79_16640) - 3321082..3321655 (+) 574 Protein_3193 CYTH domain-containing protein -
  I6I79_RS16645 (I6I79_16645) - 3321764..3322420 (+) 657 WP_201689488.1 ClpXP adapter SpxH family protein -
  I6I79_RS16650 (I6I79_16650) pepF 3322549..3324366 (-) 1818 WP_201689496.1 oligoendopeptidase F Regulator
  I6I79_RS16655 (I6I79_16655) - 3324435..3325424 (-) 990 WP_201689504.1 competence protein CoiA -
  I6I79_RS16660 (I6I79_16660) - 3325525..3326175 (-) 651 WP_005229698.1 adaptor protein MecA -
  I6I79_RS16665 (I6I79_16665) spxA 3326328..3326726 (-) 399 WP_003127030.1 transcriptional regulator SpxA -
  I6I79_RS16670 (I6I79_16670) - 3327427..3329163 (-) 1737 WP_201689506.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68999.58 Da        Isoelectric Point: 4.6933

>NTDB_id=527296 I6I79_RS16650 WP_201689496.1 3322549..3324366(-) (pepF) [Enterococcus casseliflavus strain FDAARGOS_1122]
MSETKQLPARESIPVEKTWDLTKIYADDAAFDIEFQEIQAQVKEASRYQGTLADGPQAFLSALEFVLALSRRLEKLYVYS
HLKNDQDTANTTYQGLYAKASNLVAQVSEAVAWFDPELLTMSDETIWGYFDQEPKLAVYRHMIEKTINERPHVLPAEQEA
LLAGAGEIFGAPGNIFSVLNNADLDFPVVEDENGEKVQLSNGVYGELMESTDRSVREAAFKGLYGVYEQFRNTFAQTLST
NIKAHNFKAKARKFDSARQAALSANHIPESVYDTLVDVVNQHLPLLHRYMALRKRLLAVDTLHMYDVYTPILGEAPIRYT
YEEAVGKAKEALKPLGEEYLAVVEEAFSNRWIDVVENKGKRSGAYSSGAYDTLPYILMNWNDRLDQLFTLVHEMGHSVHS
YFTRNNQPYAYGDYSIFLAEIASTTNENILTEYMLQTETDPRVKAYVLNHFLDGFKGTIFRQTQFAEFEHFMHVEDAKGT
PLTSEFLSENYAELNAKYYGPSVEKDPEIRLEWSRIPHFYYNYYVYQYSTGFSAASALAKKILAGEPDALTNYLNYLKAG
RSDYPIEVMKKAGVDMTKADYIEDAMKVFEQRLNELEELVKEIEA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=527296 I6I79_RS16650 WP_201689496.1 3322549..3324366(-) (pepF) [Enterococcus casseliflavus strain FDAARGOS_1122]
ATGTCAGAAACAAAACAATTACCAGCACGTGAATCGATTCCAGTCGAAAAAACGTGGGACTTAACGAAAATCTATGCCGA
TGATGCGGCTTTTGACATAGAATTTCAAGAGATCCAAGCACAAGTCAAAGAAGCAAGTCGTTACCAAGGTACTTTAGCCG
ATGGGCCGCAAGCCTTCTTATCCGCATTAGAATTTGTTTTAGCGCTTTCTCGTCGTTTAGAGAAACTCTATGTATACAGT
CATTTGAAAAACGATCAAGATACTGCCAATACGACGTATCAAGGCTTGTATGCAAAAGCAAGTAACTTAGTTGCGCAAGT
AAGTGAAGCCGTTGCTTGGTTTGATCCTGAGCTATTGACAATGTCTGATGAAACGATTTGGGGCTATTTCGATCAAGAGC
CGAAACTAGCTGTTTATCGTCATATGATCGAAAAAACCATCAACGAACGTCCACATGTCTTGCCAGCGGAGCAAGAAGCG
TTATTAGCTGGTGCTGGCGAAATTTTTGGGGCACCTGGCAACATTTTTTCTGTTTTAAACAATGCTGATTTGGATTTTCC
AGTAGTTGAAGATGAAAACGGGGAAAAAGTACAGTTATCTAATGGTGTATACGGTGAGTTGATGGAAAGCACGGATCGGT
CTGTCCGTGAAGCAGCCTTTAAAGGTCTTTATGGTGTCTATGAGCAATTCCGCAATACCTTTGCCCAAACATTAAGCACC
AATATCAAAGCCCATAACTTTAAAGCAAAAGCCCGCAAATTTGATTCGGCACGGCAAGCCGCTTTGAGTGCCAACCACAT
TCCTGAAAGTGTCTACGATACATTAGTGGATGTCGTCAATCAGCACCTGCCATTGTTGCATCGTTACATGGCATTAAGAA
AACGCCTGTTGGCTGTCGATACGTTGCATATGTATGATGTTTATACGCCGATTTTAGGGGAAGCACCCATTCGATATACC
TATGAAGAAGCAGTCGGAAAAGCGAAAGAAGCGTTAAAACCATTAGGTGAAGAATACCTTGCGGTGGTTGAAGAAGCCTT
CAGCAATCGGTGGATCGATGTCGTTGAAAACAAAGGCAAACGCAGTGGCGCGTATTCTTCTGGTGCCTATGATACGCTGC
CATATATCCTGATGAACTGGAATGATCGATTGGATCAACTCTTTACTCTTGTTCATGAAATGGGACACAGTGTGCATAGT
TACTTTACACGTAATAACCAGCCTTATGCCTATGGCGATTATTCGATTTTCTTAGCAGAAATCGCTTCAACCACCAATGA
AAATATTTTGACAGAGTATATGCTGCAGACTGAAACAGATCCACGGGTCAAAGCTTATGTCTTGAATCATTTTCTTGATG
GCTTCAAAGGAACGATTTTCCGTCAAACGCAATTTGCCGAGTTTGAACACTTCATGCACGTGGAAGATGCGAAAGGAACG
CCGTTGACCAGTGAGTTCTTAAGCGAGAACTATGCCGAGTTAAATGCAAAATACTACGGACCTTCTGTTGAAAAAGATCC
TGAGATTCGTCTTGAGTGGTCACGCATTCCGCATTTCTATTACAATTACTATGTTTACCAGTATTCAACCGGATTTTCGG
CAGCTTCTGCTTTAGCGAAGAAAATCTTAGCAGGTGAACCAGATGCCTTAACCAACTATTTGAACTATTTGAAAGCTGGA
CGCAGTGATTATCCAATCGAAGTCATGAAAAAAGCGGGCGTCGATATGACAAAAGCAGATTATATTGAAGACGCGATGAA
AGTATTTGAGCAACGCTTGAATGAATTGGAAGAACTCGTCAAAGAAATTGAAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.324

98.017

0.552