Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   K6974_RS12275 Genome accession   NZ_CP082204
Coordinates   2451410..2451859 (-) Length   149 a.a.
NCBI ID   WP_099806598.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2446410..2456859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS12260 (K6974_12130) - 2446901..2447695 (+) 795 WP_024376123.1 formate/nitrite transporter family protein -
  K6974_RS12265 (K6974_12135) - 2447784..2449568 (-) 1785 WP_222336542.1 ABC transporter ATP-binding protein -
  K6974_RS12270 (K6974_12140) - 2449708..2451417 (-) 1710 WP_099778882.1 ABC transporter ATP-binding protein -
  K6974_RS12275 (K6974_12145) rcrR 2451410..2451859 (-) 450 WP_099806598.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  K6974_RS12280 (K6974_12150) - 2452086..2453102 (+) 1017 WP_029177252.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  K6974_RS12285 (K6974_12155) galU 2453121..2454023 (+) 903 WP_024377764.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K6974_RS12290 (K6974_12160) - 2454042..2454719 (-) 678 WP_029177251.1 rhomboid family intramembrane serine protease -
  K6974_RS12295 (K6974_12165) - 2454703..2455245 (-) 543 WP_029177250.1 5-formyltetrahydrofolate cyclo-ligase -
  K6974_RS12300 (K6974_12170) - 2455286..2456413 (-) 1128 WP_222336544.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17180.75 Da        Isoelectric Point: 8.1416

>NTDB_id=527293 K6974_RS12275 WP_099806598.1 2451410..2451859(-) (rcrR) [Streptococcus suis strain FJSM5]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELKISKSVASNLVKRMEKNGFIQ
VLPSKVDKRFKQLVLTEKGQGKICHLKAFHDEMHHSLFGGIQKEDFDLVKQVANQLKENIQHYKEKKHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=527293 K6974_RS12275 WP_099806598.1 2451410..2451859(-) (rcrR) [Streptococcus suis strain FJSM5]
GTGGGACATACCATTGCAGATTTTCGGAACCTGCTCAATCAGATTGAACAAATCAGTGAAACCATTGCAAAAGAATACGA
TGTGGAGCACTTGGCTGGTCCACAGGGCTGGGCCTTACGTTTCATAGCGGAACGGTCGGAAGCCGAAACCTTTGTCAAAG
ATATAGAAGCAGAATTGAAGATTTCCAAATCCGTTGCCAGCAATCTGGTCAAGAGAATGGAGAAAAATGGCTTTATCCAA
GTCCTTCCCTCTAAGGTTGACAAACGCTTCAAACAGCTGGTTTTGACAGAGAAGGGACAAGGGAAAATCTGTCACCTGAA
AGCCTTCCATGATGAAATGCACCATTCACTTTTTGGGGGCATTCAAAAAGAAGACTTTGATTTGGTTAAACAGGTGGCTA
ATCAATTAAAAGAAAATATTCAACACTATAAGGAGAAGAAACATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.972

94.631

0.416