Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I6I79_RS13075 Genome accession   NZ_CP068126
Coordinates   2568088..2569761 (+) Length   557 a.a.
NCBI ID   WP_016610293.1    Uniprot ID   A0A377KTG8
Organism   Enterococcus casseliflavus strain FDAARGOS_1122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2563088..2574761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I79_RS13045 (I6I79_13045) - 2563408..2564259 (+) 852 WP_005235351.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  I6I79_RS13050 (I6I79_13050) xseA 2564260..2565612 (+) 1353 WP_201688935.1 exodeoxyribonuclease VII large subunit -
  I6I79_RS13055 (I6I79_13055) - 2565593..2565814 (+) 222 WP_005235356.1 exodeoxyribonuclease VII small subunit -
  I6I79_RS13060 (I6I79_13060) - 2565811..2566707 (+) 897 WP_201688937.1 polyprenyl synthetase family protein -
  I6I79_RS13065 (I6I79_13065) - 2566704..2567525 (+) 822 WP_201688938.1 TlyA family RNA methyltransferase -
  I6I79_RS13070 (I6I79_13070) argR 2567623..2568072 (+) 450 WP_005225777.1 arginine repressor -
  I6I79_RS13075 (I6I79_13075) recN 2568088..2569761 (+) 1674 WP_016610293.1 DNA repair protein RecN Machinery gene
  I6I79_RS13080 (I6I79_13080) - 2569857..2570588 (+) 732 WP_201688939.1 alpha/beta hydrolase -
  I6I79_RS13085 (I6I79_13085) - 2570989..2571843 (+) 855 WP_010748000.1 phosphate ABC transporter substrate-binding protein PstS -
  I6I79_RS13090 (I6I79_13090) pstC 2571941..2572861 (+) 921 WP_005225781.1 phosphate ABC transporter permease subunit PstC -
  I6I79_RS13095 (I6I79_13095) pstA 2572861..2573745 (+) 885 WP_005225782.1 phosphate ABC transporter permease PstA -
  I6I79_RS13100 (I6I79_13100) pstB 2573759..2574565 (+) 807 WP_005225783.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62575.69 Da        Isoelectric Point: 4.5175

>NTDB_id=527288 I6I79_RS13075 WP_016610293.1 2568088..2569761(+) (recN) [Enterococcus casseliflavus strain FDAARGOS_1122]
MLLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSSDYLRQGAEKCRLEGIFEWPNQQEFKELT
ADLGIDEEEVLIVQRDISQSGKTICRVNGRTVTLSVLRQIGLFLVDIQGQNEHQELLQPEKHLALMDGFGDDAFKAELAS
YRQAYQAYRSLEKHVRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEEQLIDEREKLTNYQKIVDALGQSYGALSAEE
VNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYYLLQDAATDISRQVDNLELDEGRLEEVISRLETIRQLKRKYGESI
PVILAYYDEISKEISESAYTEGQLEQLEEELAQKAEAVWQLAEALHVKRRELAHRLEKEIVQELKELYMEHAQFEVRFAS
GSKQLSSSGFDTVEFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKIAK
IAANSQVLCITHLPQVAAVADNQYFIEKAIQEGRTETHVRKLSEEERVAEIARMLSGAEITDLTIEHARELLALAHR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=527288 I6I79_RS13075 WP_016610293.1 2568088..2569761(+) (recN) [Enterococcus casseliflavus strain FDAARGOS_1122]
ATGCTTTTAGAATTGTCGATCCAAAATTTTGCGATTATCTCCAACTTGCACCTGTCTTTTCATGAGGGGATGACGGCTCT
AACAGGTGAAACAGGTGCTGGAAAATCAATCATTATCGATGCGATGGGCTTACTAGCAGGTGGCAGAGGATCCAGTGACT
ATTTGCGTCAAGGCGCAGAAAAATGCCGTTTGGAAGGGATTTTTGAATGGCCGAATCAGCAGGAGTTCAAAGAATTGACT
GCCGATCTGGGTATTGATGAAGAAGAAGTTCTGATCGTACAACGGGATATCTCTCAATCGGGTAAAACTATTTGTCGTGT
GAATGGTCGAACCGTTACCTTGTCGGTTTTGCGCCAAATCGGCTTGTTTTTAGTTGATATCCAAGGACAAAATGAGCATC
AAGAGCTACTGCAGCCAGAAAAACATTTGGCGTTGATGGATGGTTTTGGAGATGATGCCTTTAAAGCAGAACTTGCAAGT
TACCGTCAAGCCTATCAAGCCTATCGCTCCTTAGAAAAACATGTGCGGACCATTCAAGAAAATGAGCAGCTCTATGTGCA
GCGAATGGACATGCTGCGTTTTCAACAAGAAGAGATCGCCCAAGCGGAATTGATGGAAAATGAAGAAGAGCAGCTGATCG
ATGAACGAGAAAAACTGACCAATTATCAAAAAATCGTGGATGCTCTAGGGCAAAGCTATGGCGCTCTATCCGCCGAAGAA
GTTAATAGCCTAGATGGAGTCAGTGTGGCATTATCAGAGATCCAGTCGATCGCCCATCTTGATCCTGCGTATGAAAAAAT
CAGTGAAGCGATCCAAAGTGCGTATTACTTGTTGCAAGATGCAGCCACTGATATTTCGCGGCAAGTCGACAACCTTGAAT
TAGATGAAGGCCGACTGGAAGAAGTCATTTCACGACTAGAAACGATTCGTCAATTGAAGCGCAAATACGGGGAATCGATT
CCTGTGATCCTTGCTTATTATGACGAGATCAGCAAAGAAATCAGCGAATCAGCCTATACGGAAGGTCAGTTGGAGCAATT
AGAAGAAGAGCTTGCCCAAAAAGCTGAAGCAGTTTGGCAGCTGGCGGAAGCCTTGCACGTCAAACGACGTGAACTGGCTC
ATCGTTTAGAAAAAGAAATCGTTCAAGAGTTAAAAGAGCTGTATATGGAGCACGCGCAATTTGAAGTACGGTTTGCATCT
GGCTCAAAACAATTAAGCAGCAGCGGCTTTGATACCGTGGAGTTTTATTTGACCACCAACCCCGGTGAAGGCATGAAACC
GTTAGTGCGAGTTGCTTCTGGAGGAGAGCTTTCTCGGATCTTATTAGCGCTTAAATCGATTTTCTCCCGCAAGCAAGGAA
TCACTAGTATTGTCTTTGATGAGGTGGATACTGGGGTCAGTGGCCGAGTAGCTCAGGCAATCGCCGAAAAAATCGCCAAG
ATCGCTGCGAATTCGCAAGTCTTGTGTATCACCCACTTGCCGCAAGTAGCGGCTGTGGCGGACAATCAATATTTTATCGA
AAAAGCAATTCAAGAAGGTCGGACAGAAACCCATGTCCGTAAATTATCAGAAGAAGAACGAGTGGCTGAGATCGCCCGTA
TGCTCTCAGGTGCAGAAATCACCGATTTAACGATCGAACATGCACGAGAACTATTGGCGCTGGCTCACCGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377KTG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.719

100

0.488