Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I79_RS05080 Genome accession   NZ_CP068126
Coordinates   892958..894328 (+) Length   456 a.a.
NCBI ID   WP_201690824.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_1122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 887958..899328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I79_RS05050 (I6I79_05050) - 888424..889242 (+) 819 WP_005232914.1 ZIP family metal transporter -
  I6I79_RS05055 (I6I79_05055) - 889298..889501 (-) 204 WP_201690810.1 hypothetical protein -
  I6I79_RS05060 (I6I79_05060) - 889652..890053 (+) 402 WP_201690812.1 DUF4809 family protein -
  I6I79_RS05065 (I6I79_05065) - 890158..891402 (-) 1245 WP_201690814.1 glutamate-5-semialdehyde dehydrogenase -
  I6I79_RS05070 (I6I79_05070) proB 891399..892214 (-) 816 WP_081117600.1 glutamate 5-kinase -
  I6I79_RS05075 (I6I79_05075) - 892404..892913 (+) 510 WP_010748479.1 hypothetical protein -
  I6I79_RS05080 (I6I79_05080) radA 892958..894328 (+) 1371 WP_201690824.1 DNA repair protein RadA Machinery gene
  I6I79_RS18145 - 894330..894461 (+) 132 WP_254907872.1 hypothetical protein -
  I6I79_RS05085 (I6I79_05085) - 894497..895636 (+) 1140 WP_005226396.1 PIN/TRAM domain-containing protein -
  I6I79_RS05090 (I6I79_05090) gltX 895806..897263 (+) 1458 WP_016608945.1 glutamate--tRNA ligase -
  I6I79_RS05095 (I6I79_05095) epsC 897524..898060 (+) 537 WP_026008130.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49620.34 Da        Isoelectric Point: 8.2103

>NTDB_id=527276 I6I79_RS05080 WP_201690824.1 892958..894328(+) (radA) [Enterococcus casseliflavus strain FDAARGOS_1122]
MAKKAKSQFVCQNCGYSSPKYLGKCPNCGSWNSMVEEVIQETADRRVRTTLTGQKMQPTKIADVVPKKEPRVQTKLAELN
RVLGGGVVPGSLILIGGDPGIGKSTLLLQVSQQLAAIGGTVLYVSGEESAEQIKMRAQRLGAIDTEFYLYGETDMSEISK
AIENIRPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEKHHSFRILRAVKNRFGSTNEIGIFEMEEGGLKEVANPSQVFLEERLEGATGSAIVVAMEGSRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTCPTECFIGEIGLTG
EIRRVNAIEQRVKEVQKLGFTKVYLPKNNLTGWQPPKGIEVEGVSTLAETLRKVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=527276 I6I79_RS05080 WP_201690824.1 892958..894328(+) (radA) [Enterococcus casseliflavus strain FDAARGOS_1122]
ATGGCAAAAAAAGCAAAAAGTCAATTTGTCTGTCAAAATTGTGGGTATAGTTCCCCTAAATATTTAGGGAAATGCCCCAA
TTGCGGCAGCTGGAATTCAATGGTGGAAGAAGTGATCCAAGAAACCGCCGATCGTCGAGTACGTACGACATTGACGGGGC
AAAAGATGCAGCCGACGAAAATCGCCGATGTCGTACCGAAAAAAGAACCGCGGGTCCAAACGAAACTCGCTGAGTTGAAT
CGCGTCTTAGGTGGCGGCGTGGTCCCAGGCTCCTTGATTTTGATCGGTGGGGATCCAGGGATCGGAAAATCGACGCTGCT
CTTGCAAGTTTCCCAGCAATTAGCAGCGATCGGCGGGACGGTCTTGTATGTGTCAGGAGAAGAAAGTGCCGAACAAATCA
AAATGCGGGCGCAGCGCTTAGGCGCCATCGACACAGAATTTTATCTCTATGGGGAAACGGACATGTCAGAGATCAGTAAA
GCGATCGAAAACATCCGCCCAGATTATGTGATCATCGATTCGATCCAAACCATGACCCAACCGGATATCACCAGCGTGGC
AGGCAGTGTCAGCCAAGTGCGAGAAACGACCGCAGAATTGCTGAAAATCGCCAAAACCAATGGCATCGCCATCTTTATCG
TTGGCCACGTGACGAAGGAAGGCTCGATCGCAGGACCGCGGATGCTGGAGCATATGGTGGATACCGTCTTGTATTTCGAA
GGCGAAAAGCACCATAGTTTTCGAATTTTGCGGGCCGTCAAAAACCGCTTTGGGTCCACCAATGAGATCGGGATTTTTGA
AATGGAAGAAGGCGGGTTGAAAGAAGTCGCCAATCCGTCACAAGTCTTTTTGGAAGAACGCTTAGAAGGCGCAACTGGAT
CGGCGATCGTAGTGGCAATGGAAGGCAGTCGGCCAATCTTGGTGGAGATCCAAGCACTGGTCACGCCAACGATGTTCGGC
AATGCCAAACGCACGACGACGGGGCTAGACTTCAACCGCGTCTCGCTGATCATGGCGGTTTTAGAAAAACGGGCAGGCTT
GCTGCTGCAAAATCAAGATGCCTACTTAAAAGCAGCCGGCGGGGTCAAATTAAATGAACCTGCGATCGATTTAGCGATCG
CTGTTAGTATCGCGTCTAGCTACAAAGAAAAAGGCACCTGCCCGACGGAGTGTTTTATCGGTGAAATTGGCTTGACGGGT
GAGATTCGCCGAGTCAACGCGATCGAGCAACGGGTCAAAGAGGTGCAAAAACTAGGTTTTACGAAAGTTTATTTGCCGAA
AAATAATCTGACTGGCTGGCAGCCGCCCAAAGGCATCGAAGTCGAAGGCGTGTCTACCTTAGCCGAAACCTTGCGGAAAG
TCTTCCGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.725

99.781

0.746
  radA Streptococcus mitis SK321

74.505

99.781

0.743
  radA Streptococcus pneumoniae Rx1

74.505

99.781

0.743
  radA Streptococcus pneumoniae D39

74.505

99.781

0.743
  radA Streptococcus pneumoniae R6

74.505

99.781

0.743
  radA Streptococcus pneumoniae TIGR4

74.505

99.781

0.743
  radA Bacillus subtilis subsp. subtilis str. 168

67.184

98.904

0.664