Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   K6974_RS06245 Genome accession   NZ_CP082204
Coordinates   1239984..1241792 (+) Length   602 a.a.
NCBI ID   WP_222336895.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1234984..1246792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS06215 (K6974_06150) - 1235664..1236431 (+) 768 WP_222336892.1 class I SAM-dependent methyltransferase -
  K6974_RS06220 (K6974_06155) pcp 1236428..1237075 (+) 648 WP_029188455.1 pyroglutamyl-peptidase I -
  K6974_RS06225 (K6974_06160) - 1237075..1237383 (+) 309 WP_222336893.1 DUF4298 domain-containing protein -
  K6974_RS06230 (K6974_06165) rpsP 1237508..1237780 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  K6974_RS06235 (K6974_06170) - 1237802..1238044 (+) 243 WP_002940680.1 KH domain-containing protein -
  K6974_RS06240 (K6974_06175) rcrP 1238239..1239975 (+) 1737 WP_222336894.1 ABC transporter ATP-binding protein Regulator
  K6974_RS06245 (K6974_06180) rcrQ 1239984..1241792 (+) 1809 WP_222336895.1 ABC transporter ATP-binding protein Regulator
  K6974_RS06250 (K6974_06185) - 1242019..1242942 (-) 924 WP_222336896.1 polysaccharide deacetylase family protein -
  K6974_RS06255 (K6974_06190) - 1243047..1244333 (+) 1287 WP_002940676.1 homoserine dehydrogenase -
  K6974_RS06260 (K6974_06195) thrB 1244337..1245197 (+) 861 WP_029188460.1 homoserine kinase -
  K6974_RS06265 (K6974_06200) murB 1245432..1246340 (+) 909 WP_099872144.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67170.28 Da        Isoelectric Point: 5.1593

>NTDB_id=527248 K6974_RS06245 WP_222336895.1 1239984..1241792(+) (rcrQ) [Streptococcus suis strain FJSM5]
MKNKSVFTRVWDYLRRYQSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINVSYIAIMLGLYALR
ALMYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDQHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLAFVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGLSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFENVEFGYSEDKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSQSNTLRKSKADVVDLI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=527248 K6974_RS06245 WP_222336895.1 1239984..1241792(+) (rcrQ) [Streptococcus suis strain FJSM5]
ATGAAGAATAAATCAGTATTTACTCGTGTTTGGGACTATTTGCGTCGTTACCAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATTAGCGCAGTTATGAATGCTTTGGAGCCCTTTGTATTGGGGCTTATCATCACAGAATTGACCAAGAATTTGT
TGGATATTGCTAATGGAGTAGAGGGGGCACAAATAAATGTTTCCTATATCGCTATCATGCTTGGTCTGTACGCACTCCGT
GCCCTTATGTACGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGTGCGACCAAGGAATTGCG
TCAGGATTTAAGCCACAAGATTAACAAAATTCCTGTTTCTTACTTTGATCAGCACCAGTATGGCGACCTGCTAGGGCGTT
TTACCAGCGATGTAGAAACGGTTTCGAATGCTCTGCAACAAAGTTTTCTTCAGTTGGTTAATGCTGTCTTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCGTTGGCTTTTGTAGTCGTGACCTTGGTTCCAGTGACTTATTTTGG
TTCCAAGTTTGTCATGGGTAAATCTCAGCCCTATTTCAAACAACAGGCTGATGCCCTCGGTCGTTTGAACGGCTTTGTTC
AAGAAAATCTCACAGGCTTCAATGTCCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATAACT
GCTGACTTGCAGGAAGTTGGTTTCAAGGCTAGTTTTATGTCTGGTTTGCTCATGCCTCTGGTTCATGGCTTGTCCAATAT
CGCCTATGTCGTCGTAGCCCTGCTTTCTGGTCTGAAAGTACTTGCAGGTACATTGACAGTAGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTAACCCAGTTGGCACCCCAGTTGCAGTCTGCCAAATCCTCC
CTTGAACGCATCTTTTCAGTCCTAGACGAGCTTGACGAAGAAGACGCAAATGCGCTTGAGTTGACAGAAAGTCTGACTGG
ACAAGTTAGCTTCGAAAATGTCGAATTTGGCTATTCAGAAGATAAGCCCCTCATCCGAAACTTTAATCTAGATGTTCAAC
CAGGTGAAATGGTGGCCATCGTTGGTCCAACAGGGGCTGGTAAGACTACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACAGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACTATTGCGCGTGCCTTGTTGGCGGATCCGGCCATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTTTTGATCCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTTATTGCCCACCGCTTATCAACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTTTATTACAATCTTTATCAAAGCCAATTTAGTCA
ATCTAATACTCTTCGAAAATCAAAAGCAGACGTTGTTGACTTGATTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.316

98.173

0.425