Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   K6974_RS06240 Genome accession   NZ_CP082204
Coordinates   1238239..1239975 (+) Length   578 a.a.
NCBI ID   WP_222336894.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1233239..1244975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS06200 (K6974_06135) - 1233452..1234120 (+) 669 WP_222336890.1 DUF6572 domain-containing protein -
  K6974_RS06205 - 1234179..1234970 (+) 792 WP_261311663.1 TNT domain-containing protein -
  K6974_RS06210 (K6974_06145) - 1234967..1235608 (+) 642 WP_222336891.1 Imm59 family immunity protein -
  K6974_RS06215 (K6974_06150) - 1235664..1236431 (+) 768 WP_222336892.1 class I SAM-dependent methyltransferase -
  K6974_RS06220 (K6974_06155) pcp 1236428..1237075 (+) 648 WP_029188455.1 pyroglutamyl-peptidase I -
  K6974_RS06225 (K6974_06160) - 1237075..1237383 (+) 309 WP_222336893.1 DUF4298 domain-containing protein -
  K6974_RS06230 (K6974_06165) rpsP 1237508..1237780 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  K6974_RS06235 (K6974_06170) - 1237802..1238044 (+) 243 WP_002940680.1 KH domain-containing protein -
  K6974_RS06240 (K6974_06175) rcrP 1238239..1239975 (+) 1737 WP_222336894.1 ABC transporter ATP-binding protein Regulator
  K6974_RS06245 (K6974_06180) rcrQ 1239984..1241792 (+) 1809 WP_222336895.1 ABC transporter ATP-binding protein Regulator
  K6974_RS06250 (K6974_06185) - 1242019..1242942 (-) 924 WP_222336896.1 polysaccharide deacetylase family protein -
  K6974_RS06255 (K6974_06190) - 1243047..1244333 (+) 1287 WP_002940676.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65197.50 Da        Isoelectric Point: 5.3031

>NTDB_id=527247 K6974_RS06240 WP_222336894.1 1238239..1239975(+) (rcrP) [Streptococcus suis strain FJSM5]
MRLIWTYLKKYPKWIALDLFGAFLFIVVNLGLPTFLARMIDQGITKNNVEQLYFWAGMMGLIVLLGIVGRITLAYAAGQL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMVASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQETRFAEVNEEYTETSKKLFNLTALTE
PLFVQIIIAMIVAIVWFALSPLKDGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKLDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRARLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=527247 K6974_RS06240 WP_222336894.1 1238239..1239975(+) (rcrP) [Streptococcus suis strain FJSM5]
ATGCGACTAATTTGGACTTATTTGAAAAAATACCCAAAGTGGATTGCTTTGGACTTGTTCGGAGCATTCCTATTCATAGT
AGTTAACTTGGGCTTGCCGACATTTTTGGCAAGAATGATTGACCAAGGGATTACAAAAAACAATGTTGAACAATTATATT
TCTGGGCAGGAATGATGGGATTGATTGTTTTGCTTGGTATTGTTGGACGCATTACTCTAGCCTATGCGGCTGGACAGCTA
ACAACCAATATCGTCAAGGATATTCGGAATGATTTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGCATGACCAACGATGCTTTTGTTTTGATGCAGTTTTCAGAAATGGTATTGAAGCTGG
GAATTATCACACCTTTGATGATGGTTGCCTCGGTCATCATGACCTTGGTAACCAGTCCGAGCTTGGCCTGGACAGTAGCA
GTAGCTATGCCGTTTCTAGTTTTTGTTATTTTCTATGTAGCTACTAAAACTCGTCCTCTCTCTGAAAAACAACAGAAACG
CTTGGATACGATTAACCAGTATGTTCGTGAAAATCTCATGGGCTTGCGGGTTATTCGTGCCTTTACGCGTGAAGAGTTCC
AAGAAACTCGTTTTGCGGAGGTCAATGAAGAATATACTGAAACATCCAAAAAACTCTTTAACCTGACTGCGCTGACAGAG
CCACTATTTGTGCAGATTATTATTGCCATGATTGTGGCTATTGTCTGGTTTGCCCTGTCTCCTTTGAAAGATGGTAGTTT
GCAGATTGGTGATTTGGTAGCCTTTATCGAATACAGTTTCCACGCCCTTTTCTCCTTCTTGCTCTTTGCCAACTTGTTTA
ATATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTAGACATGCCGATTTCTATTTCTAAGAATGAG
GACGGTATTACTGAAACAGATACTCGTGGCTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAGTC
CCCTGTTCTCCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACAATTGCCTTTATCGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTTCGCAGTAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGTTGGATGCTAGTCTTGCTGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAGAAATTCGACACCCATCTAGCAGAAGGTGGAAGCAACTTGTCAGGTGGTCAAAAGCAACGTTTGTCC
ATTGCCCGTGCCATTGTCAAGCAGCCAGATATCTACATCTTTGATGACTCTTTCTCAGCCTTGGACTATAAGACGGATGC
CATTTTGCGGGCTCGCTTGAAAGAAGTGACGGAGAATGCGACAGTGCTGATAGTTGCCCAACGTGTCGGAACCATTATGG
ATGCAGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGTCGCGGTACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGTGAAATTGCCAATTCTCAGCTTAACCGTCAATCGCTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.704

100

0.403