Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K6974_RS03205 Genome accession   NZ_CP082204
Coordinates   605478..607139 (+) Length   553 a.a.
NCBI ID   WP_222337420.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 600478..612139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS03175 (K6974_03150) - 600574..601674 (+) 1101 Protein_575 ISAs1 family transposase -
  K6974_RS03180 (K6974_03155) xseA 601838..603181 (+) 1344 WP_222337418.1 exodeoxyribonuclease VII large subunit -
  K6974_RS03185 (K6974_03160) - 603156..603371 (+) 216 WP_014637116.1 exodeoxyribonuclease VII small subunit -
  K6974_RS03190 (K6974_03165) - 603371..604243 (+) 873 WP_222337419.1 polyprenyl synthetase family protein -
  K6974_RS03195 (K6974_03170) - 604236..605057 (+) 822 WP_029185081.1 TlyA family RNA methyltransferase -
  K6974_RS03200 (K6974_03175) - 605050..605475 (+) 426 WP_002942941.1 arginine repressor -
  K6974_RS03205 (K6974_03180) recN 605478..607139 (+) 1662 WP_222337420.1 DNA repair protein RecN Machinery gene
  K6974_RS03210 (K6974_03185) - 607233..608066 (+) 834 WP_222337421.1 DegV family protein -
  K6974_RS03215 (K6974_03190) - 608059..608892 (+) 834 WP_033875538.1 SGNH/GDSL hydrolase family protein -
  K6974_RS03220 (K6974_03195) - 608864..609460 (+) 597 WP_172060861.1 YpmS family protein -
  K6974_RS03225 (K6974_03200) - 609550..609825 (+) 276 WP_002936247.1 HU family DNA-binding protein -
  K6974_RS03230 (K6974_03205) - 610024..611166 (-) 1143 Protein_586 tyrosine-type recombinase/integrase -
  K6974_RS03235 (K6974_03210) - 611374..611724 (+) 351 Protein_587 transposase -
  K6974_RS03240 (K6974_03215) - 611728..611916 (+) 189 Protein_588 IS110 family transposase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62744.96 Da        Isoelectric Point: 4.7073

>NTDB_id=527233 K6974_RS03205 WP_222337420.1 605478..607139(+) (recN) [Streptococcus suis strain FJSM5]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSILKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDKFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQYFIEKISDEHSTVSRVRLLTKDERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=527233 K6974_RS03205 WP_222337420.1 605478..607139(+) (recN) [Streptococcus suis strain FJSM5]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATCGACGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCAAAAGCTGAGATTGAAGGGCTTTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTCAGTCGTGT
CAATGGACAAATGGTCAATTTATCTATCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATAAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCTTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCGGCAGATTTGAAGTCTGGCGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCTTGCAATTGGAAAGTCGGCTGGATTTGCTCAATACCATTACGAAGAAATATGGCGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGCGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTTAGTCAATCACGCCATGAATTAGCAG
TTGTTTTAGAAGATATTATCCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAGACAGTCGAATTTTACATCTCTACCAACCCAGGTGAAGACTTTAAGCCTCTAGT
TAAGGTGGCTTCTGGAGGAGAGTTGTCTCGTTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAGATTTATAAAATCGGA
CAATACGGCCAGGTTCTGGCGATCTCTCATTTACCGCAAGTCATTGCCATCGCAGATTATCAGTACTTTATTGAAAAAAT
ATCAGATGAGCATTCGACCGTTTCTCGTGTTCGTCTCTTGACAAAAGATGAGCGAATCGAAGAAATTGCCAAGATGTTAG
CTGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.509

100

0.448